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FHIR Osiris Implementation Guide
1.1.0 - trial-implementation

This page is part of the OSIRIS FHIR Implementation Guide (v1.1.0: Release) based on FHIR (HL7® FHIR® Standard) R4. This is the current published version. For a full list of available versions, see the Directory of published versions

Table of Contents

.. 0 Table of Contents
... 1 Home
... 2 Downloads
... 3 Requests
... 4 Valuesets
... 5 Artifacts Summary
.... 5.1 Oncologic Adverse Event
.... 5.2 Oncology Surgery
.... 5.3 Oncology-related Medication Statement
.... 5.4 Response Evaluation
.... 5.5 Treatment
.... 5.6 Analysis
.... 5.7 Biological Sample
.... 5.8 Biomarker
.... 5.9 Cause Of Death
.... 5.10 Family Cancer History
.... 5.11 Oncology Patient
.... 5.12 Oncology Patient Related Pathology
.... 5.13 Performance Status
.... 5.14 Sequencing Analysis
.... 5.15 TNM
.... 5.16 Tumor Pathology Event
.... 5.17 Vital Status
.... 5.18 3 Prime Molecular Sequence
.... 5.19 5 Prime Molecular Sequence
.... 5.20 Annotation Reference
.... 5.21 Gene Expression
.... 5.22 Gene Fusion
.... 5.23 Genome Entity
.... 5.24 Sequencing Device
.... 5.25 Single Nucleotide Polymorphism
.... 5.26 Validation
.... 5.27 Variant Annotation
.... 5.28 Variant Copy Number
.... 5.29 Cancer Organization
.... 5.30 Clinical Trial Subject
.... 5.31 Consent for Genetic Data Usage
.... 5.32 Oncology Clinical Trial
.... 5.33 Imaging Device
.... 5.34 Imaging Service
.... 5.35 Imaging Study
.... 5.36 Imaging Study Injection
.... 5.37 Imaging Study Injection Contrast
.... 5.38 Location to the PACS server
.... 5.39 Radiomics Criteria
.... 5.40 Radiomics Features
.... 5.41 Radiomics Image Filters
.... 5.42 Radiotherapy course Summary
.... 5.43 Radiotherapy Phase
.... 5.44 Radiotherapy Plan
.... 5.45 Radiotherapy Volume Profile
.... 5.46 ROI segmentation
.... 5.47 Adverse Event End date
.... 5.48 Algorith mName
.... 5.49 Based On Condition (Tumor Pathology Event)
.... 5.50 Biological Sample Origin
.... 5.51 Connection with the imaging module
.... 5.52 Dose To Volume
.... 5.53 Energy Or Isotope
.... 5.54 Fusion Spanning Pairs
.... 5.55 Fusion Split Reads
.... 5.56 Gene Expression Data Type
.... 5.57 GenomeEntityType
.... 5.58 Histology
.... 5.59 Imaging Settings
.... 5.60 Laterality
.... 5.61 Modality And Technique
.... 5.62 Number of Fractions
.... 5.63 Number of Sessions
.... 5.64 Patient Ethnicity
.... 5.65 Patient Origin Center
.... 5.66 Radiomics Criteria Settings
.... 5.67 Radiomics Image Filters Settings
.... 5.68 Reason Replanification
.... 5.69 Strand bias
.... 5.70 Treatment Intent
.... 5.71 Treatment Line Number
.... 5.72 Treatment Termination Reason
.... 5.73 Tumor Pathology Event Parent
.... 5.74 Weight and Height at the time of the Serie
.... 5.75 Bodysite Value Set
.... 5.76 Modality Value Set
.... 5.77 Adverse Event Code Value Set
.... 5.78 Adverse Event Grade Value Set
.... 5.79 Algorithmic Ploidy
.... 5.80 Alteration Type Value Set
.... 5.81 Amino Acide Change Type Value Set
.... 5.82 Analysis Technical Protocol
.... 5.83 Analysis Types Value Set
.... 5.84 Biological Sample Nature Value Set
.... 5.85 Biological Sample Origin Value Set
.... 5.86 Biomarker Value Set
.... 5.87 Cause of death Value Set
.... 5.88 Chromosome Value Set
.... 5.89 CytoBand Value Set
.... 5.90 DNA Change Type Value Set
.... 5.91 Fusion Type Value Set
.... 5.92 Gene Expression Data Type Value Set
.... 5.93 GeneticMaterial
.... 5.94 Genome entity type Value Set
.... 5.95 GenomeBuild Value Set
.... 5.96 Localization Method Value Set
.... 5.97 Morphology Value Set
.... 5.98 Mutation prediction Value Set
.... 5.99 Osiris Validation Type
.... 5.100 Panel Name
.... 5.101 Parentage Value Set
.... 5.102 Pathogenicity Value Set
.... 5.103 Platform Name
.... 5.104 Radiomic Features Value Set
.... 5.105 Radiotherapy Category
.... 5.106 Radiotherapy Intent
.... 5.107 Radiotherapy Reason Replanification
.... 5.108 Radiotherapy Termination Reason
.... 5.109 Radiotherapy Treatment Location Qualifier Value Set
.... 5.110 Radiotherapy Volume Type Value Set
.... 5.111 Reference Type Value Set
.... 5.112 Response Status Value Set
.... 5.113 ROI Type Value Set
.... 5.114 Storage temperature Value Set
.... 5.115 Surgery Resection Quality Value Set
.... 5.116 TNM Version Value Set
.... 5.117 Topography Value Set
.... 5.118 Treatment Type Value Set
.... 5.119 Tumor Laterality Value Set
.... 5.120 Tumor Pathology Event Type Value Set
.... 5.121 Vital Status Value Set
.... 5.122 IBSI Code System
.... 5.123 Imaging Code System
.... 5.124 Osiris code system
.... 5.125 Radiotherapy Code System
.... 5.126 Requested SNOMED Codes Code System
.... 5.127 Requested SNOMED Codes Code System
.... 5.128 Series Modality Code System
.... 5.129 SNOMED Codes Code System
.... 5.130 fhir-osiris-annotation-1
.... 5.131 fhir-osiris-annotation-reference-1
.... 5.132 fhir-osiris-example-adverseevent-1
.... 5.133 fhir-osiris-example-analysis-clinical
.... 5.134 fhir-osiris-example-analysis-ct
.... 5.135 fhir-osiris-example-analysis-dx
.... 5.136 fhir-osiris-example-analysis-mr
.... 5.137 fhir-osiris-example-analysis-mr-2
.... 5.138 fhir-osiris-example-analysis-pt-nm
.... 5.139 fhir-osiris-example-biologicalsample-1
.... 5.140 fhir-osiris-example-biologicalsample-2
.... 5.141 fhir-osiris-example-biomarker
.... 5.142 fhir-osiris-example-causeofdeath
.... 5.143 fhir-osiris-example-consent-1
.... 5.144 fhir-osiris-example-consent-2
.... 5.145 fhir-osiris-example-imagingdevice-ct
.... 5.146 fhir-osiris-example-imagingdevice-dx
.... 5.147 fhir-osiris-example-imagingdevice-mr
.... 5.148 fhir-osiris-example-imagingdevice-mr-2
.... 5.149 fhir-osiris-example-imagingdevice-pt-nm
.... 5.150 fhir-osiris-example-imagingendpoint-ct
.... 5.151 fhir-osiris-example-imagingendpoint-dx
.... 5.152 fhir-osiris-example-imagingendpoint-mr
.... 5.153 fhir-osiris-example-imagingendpoint-mr-2
.... 5.154 fhir-osiris-example-imagingendpoint-pt-nm
.... 5.155 fhir-osiris-example-imagingstudy-ct
.... 5.156 fhir-osiris-example-imagingstudy-dx
.... 5.157 fhir-osiris-example-imagingstudy-mri
.... 5.158 fhir-osiris-example-imagingstudy-mri-2
.... 5.159 fhir-osiris-example-imagingstudy-pt-nm
.... 5.160 fhir-osiris-example-injection-medication-pt-nm
.... 5.161 fhir-osiris-example-injection-pt-nm
.... 5.162 fhir-osiris-example-oncomedicalstatement-1
.... 5.163 fhir-osiris-example-patient
.... 5.164 fhir-osiris-example-patient-ct-scan
.... 5.165 fhir-osiris-example-patient-dx
.... 5.166 fhir-osiris-example-patient-mr
.... 5.167 fhir-osiris-example-patient-mr-2
.... 5.168 fhir-osiris-example-patient-pt-nm
.... 5.169 fhir-osiris-example-patient-radiotherapy
.... 5.170 fhir-osiris-example-RadiomicsCriteria
.... 5.171 fhir-osiris-example-RadiomicsFeature
.... 5.172 fhir-osiris-example-RadiomicsImageFilter
.... 5.173 fhir-osiris-example-RadiotherapyCourse-1
.... 5.174 fhir-osiris-example-RadiotherapyCourse-2
.... 5.175 fhir-osiris-example-RadiotherapyPhase-1
.... 5.176 fhir-osiris-example-RadiotherapyPhase-2
.... 5.177 fhir-osiris-example-RadiotherapyPhase-3
.... 5.178 fhir-osiris-example-RadiotherapyPhase-4
.... 5.179 fhir-osiris-example-RadiotherapyPhase-5
.... 5.180 fhir-osiris-example-RadiotherapyPhase-6
.... 5.181 fhir-osiris-example-RadiotherapyPlan-1
.... 5.182 fhir-osiris-example-RadiotherapyVolume-1
.... 5.183 fhir-osiris-example-RadiotherapyVolume-2
.... 5.184 fhir-osiris-example-RadiotherapyVolume-3
.... 5.185 fhir-osiris-example-RadiotherapyVolume-4
.... 5.186 fhir-osiris-example-ROISegmentation
.... 5.187 fhir-osiris-example-sequencinganalysis-1
.... 5.188 fhir-osiris-example-sequencinganalysis-2
.... 5.189 fhir-osiris-example-sequencinganalysis-3
.... 5.190 fhir-osiris-example-sequencingdevice-1
.... 5.191 fhir-osiris-example-sequencingdevice-2
.... 5.192 fhir-osiris-example-sequencingdevice-3
.... 5.193 fhir-osiris-example-snp-1
.... 5.194 fhir-osiris-example-surgery-1
.... 5.195 fhir-osiris-example-surgery-2
.... 5.196 fhir-osiris-example-treatment-1
.... 5.197 fhir-osiris-example-treatment-2
.... 5.198 fhir-osiris-example-treatment-radiotherapy
.... 5.199 fhir-osiris-example-TumorPathologyEvent-instance-1
.... 5.200 fhir-osiris-example-TumorPathologyEvent-instance-2
.... 5.201 fhir-osiris-example-validation-1
.... 5.202 fhir-osiris-example-vitalstatus
.... 5.203 fhir-osiris-genome-entity-1
.... 5.204 fhir-osiris-origin-organization
.... 5.205 fhir-osiris-provider-organization
.... 5.206 FhirOSIRISResponseEvaluation-1
.... 5.207 patient-synthetic
.... 5.208 Unknown