Adverse event related to a cancer-related treatment associated to a grade from MEDDRA terminology (ex: 10047700: "Vomiting").

Oncology-related surgery with a description of the outcome using RECIST categorys.

Medication statement related to a cancer cure.

Response evaluation to an oncology treatment from RECIST terminology.

Description of a treatment plan related to an Oncology Patient.

Assessment of the technique(s) used to establish the diagnosis(es)

Description of a biological sample coming from an oncology Patient, with its storage condition.

Biomarker Observation about a patient from BiomarkerCode ValueSet.

Observation that indicates the cause of death of an Oncology Patient.

History of cancer in an Onco Patient Family.

Oncology patient defined by Osiris.

Related pathology of oncology patient.

Oncology-patient performance status observation (see https://www.ncbi.nlm.nih.gov/books/NBK97482/ for more information).

Sequencing analysis about a biological sample coming from a TumorPathologyEvent. This profile shows general information about the analysis done, additional omics results can be found in SNP, Fusion, CopyNumber, Expression and Annotation profiles.

TNM Classification of malignant tumors used to indicate the tumor, node and metastasis state of a Tumor Pathology Event.

Tumor Pathology Event (TPE) Condition describing a tumoral event: reference to the parent TPE, laterality, morphology.

Observation that indicates the last known Vital status of an Onco Patient.

3 prime molecular sequence is for referencing the 3' edge of a Fusion Observation.

5 prime molecular sequence is for referencing the 5' edge of a Fusion Observation.

The annotation reference profile indicates the reference genome / pfam domain / database used to generate the Annotation instance linked.

Observation of a Gene Expression variant derived from a SequencingAnalysis. The Expression profile is used to indicate the actionability, the pathogenecity and the gene expression quantity of the gene of interest.

Observation of a Gene Fusion derived from a SequencingAnalysis. The Fusion profile indicates the pathogenicity, the actionability and if the fusion has occured in the reading frame.

The genome entity profile is used to indicate the genome reference used to build the Annotation.

Description of a sequencing device used for a Sequencing Analysis.

Observation of a Single Nucleotide Polymorphism (SNP) derived from a Sequencing Analysis.

Validation information about data from a Variant / Expression / Fusion / CopyNumber profile.

The Annotation profile allows to add information about a SNP, a fusion, an expression or a copy number event. It is generally used to compare variant from a reference genome. There can be multiple instance of Variant Annotation Resource for one instance of SNP, CopyNumber, Expression or Fusion Resource.

Observation of a Copy Number variant derived from a SequencingAnalysis. The CopyNumber profile is used to indicate the pathogenicity, the actionability, the loss of heterozygosity, the cytogenetic location, the start - end positions, the reference sequence assembly, the variation code, the segment intensity, the number of copy found and the Copy Number segment size.

Cancer organization to describe the provider center or origin center of the onco-patient.

Subject that belongs to a oncology-related Clinical Trial.

The genetic consent resource indicates if a patient has given his authorization to share and use its genetics data.

Oncology clinical trial used to associate a Onco Patient to a Clinical Trial

Qualification of the equipment used to acquire a series of images

Description of an imaging service.

Description of an imaging study.

Description of an imaging study injection.

Description of a contrast product.

System communication to the PACS server

Description of the criteria used for the biomarkers calculations

Description of the radiomics measurements described in IBSI nomenclature

Filtering parameters used for the imaging analysis

A summary of a course of radiotherapy planned or delivered to a patient

Summary of the radiotherapy phases planned or delivered to a patient

Radiotherapy plans planned or delivered to a patient

A volume of the body treated by radiotherapy (plannes or delivered).

Description of the segmentation method used allowing the deffinition of a region of interest (ROI).

End date of the adverse event

Algorith mName

Based On Condition (Tumor Pathology Event)

Biological Sample Origin

Connection with the imaging module (ImagingStudy and ROI Segmentation)

Dose To Volume

Energy Or Isotope

Number of reads pairs spanning the fusion

Number of reads containing the fusion point

Type of the expression value corresponding to the level of data processing

Genome Entity Type

Grade of Histology

Imaging Settings.

Laterality of location (if it exists)

Modality And Technique

The number of fractions

The number of sessions

The patient ethnicity

The origin center organization of an Oncology Patient.

Radiomics Criteria Settings.

Radiomics Image Filters Settings.

Reason Replanification

Indication of the existence of strand bias at the variant position

The treatment Intent

The treatment line number

The treatment Termination Reason

Reference the Tumor Pathology Event from which the metastasis comes from.

Weight and Height at the time of the Serie

Bodysite

Modality

Adverse event codes

Adverse event grade

Algorithmic Ploidy

Alteration type

Amino Acide Change Type

Analysis technical protocol

Analysis types

Biological sample nature

Biological sample origin

Biomarker types

Cause of death

Chromosome

CytoBand

DNAChangeType

Fusion Type

Gene Expression Data Type

Genetic material

Type of genome entity

GenomeBuild

Localization Method

Cancer morphology

Mutation prediction

Osiris validation type

Panel Name

Parentage

Pathogenicity

Platform Name

ROI Type

Radiomic Features

Radiotherapy Category

RadioTherapy Intent

Radiotherapy Reason Replanification

Radiotherapy Termination Reason

Various modifiers that can be applied to body locations where radiotherapy treatments can be directed.

Codes describing the types of body volumes used in radiotherapy planning and treatment. The value set includes the most common codes from DICOM CID 9534 Radiotherapy Targets (UID 1.2.840.10008.6.1.1244) and adds a code for Organs at Risk (OAR).

Annotation reference type

Response evaluation status

Sample storage temperature

Surgery resection quality

TNM version

Cancer topography

Treatment type

Tumor laterality

Tumor pathology event type

Vital status

IBSI Code System

Imaging Code System

Custom code from osiris standard

Radiotherapy Code System

Requested SNOMED Codes by codex

Requested SNOMED Codes by mcode

SNOMED Codes Code System

Series Modality Code System

Example of ResponseEvaluation from OSIRIS_pivot_ResponseEvaluation .csv

Example of ResearchStudy from OSIRIS_pivot_Treatment.csv

Example of Instance from OSIRIS_pivot_Annotations.csv

Example of Instance from OSIRIS_pivot_Annotations.csv

Example of Patient from OSIRIS_pivot_ROISegmentation.csv

Example of Patient from OSIRIS_pivot_RadiomicsCriteria.csv

Example of Patient from OSIRIS_pivot_RadiomicsFeature.csv

Example of Patient from OSIRIS_pivot_RadiomicsImageFilter.csv

Example of instance from OSIRIS_pivot_CourseRT.csv, OSIRIS_pivot_EnergyOrIsotopeRT.csv, OSIRIS_pivot_DoseToVolumeRT.csv

Example of instance from OSIRIS_pivot_CourseRT.csv, OSIRIS_pivot_EnergyOrIsotopeRT.csv, OSIRIS_pivot_DoseToVolumeRT.csv

Example of instance from OSIRIS_pivot_PhaseRT.csv, OSIRIS_pivot_EnergyOrIsotopeRT.csv and OSIRIS_pivot_ModalityAndTechniqueRT.csv

Example of instance from OSIRIS_pivot_PhaseRT.csv, OSIRIS_pivot_EnergyOrIsotopeRT.csv and OSIRIS_pivot_ModalityAndTechniqueRT.csv

Example of instance from OSIRIS_pivot_PhaseRT.csv, OSIRIS_pivot_EnergyOrIsotopeRT.csv and OSIRIS_pivot_ModalityAndTechniqueRT.csv

Example of instance from OSIRIS_pivot_PhaseRT.csv, OSIRIS_pivot_EnergyOrIsotopeRT.csv and OSIRIS_pivot_ModalityAndTechniqueRT.csv

Example of instance from OSIRIS_pivot_PhaseRT.csv, OSIRIS_pivot_EnergyOrIsotopeRT.csv and OSIRIS_pivot_ModalityAndTechniqueRT.csv

Example of instance from OSIRIS_pivot_PhaseRT.csv, OSIRIS_pivot_EnergyOrIsotopeRT.csv and OSIRIS_pivot_ModalityAndTechniqueRT.csv

Example of instance from OSIRIS_pivot_PlanRT.csv, OSIRIS_pivot_EquipmentRT.csv and OSIRIS_pivot_ModalityAndTechniqueRT.csv

Example of instance from OSIRIS_pivot_VolumeRT.csv

Example of instance from OSIRIS_pivot_VolumeRT.csv

Example of instance from OSIRIS_pivot_VolumeRT.csv

Example of instance from OSIRIS_pivot_VolumeRT.csv

Example of TPE from OSIRIS_pivot_TumorPathologyEvent.csv

Example of TPE from OSIRIS_pivot_TumorPathologyEvent.csv

Example of Adverse Event from OSIRIS_pivot_AdverseEvent.csv

Example of Analysis from OSIRIS_pivot_Analysis.csv

Example of Analysis from OSIRIS_pivot_Analysis.csv

Example of Analysis from OSIRIS_pivot_Analysis.csv

Example of Analysis from OSIRIS_pivot_Analysis.csv

Example of Analysis from OSIRIS_pivot_Analysis.csv

Example of Analysis from OSIRIS_pivot_Analysis.csv

Example of BiologicalSample from OSIRIS_pivot_BiologicalSample.csv

Example of BiologicalSample from OSIRIS_pivot_BiologicalSample.csv

Example of Biomarker

Example of CauseOfDeath

Example of Instance from OSIRIS_pivot_Consent.csv

Example of Instance from OSIRIS_pivot_Consent.csv

Example of Imaging Study from OSIRIS_pivot_Equipment.csv

Example of Imaging Study from OSIRIS_pivot_Equipment.csv

Example of Imaging Study from OSIRIS_pivot_Equipment.csv

Example of Imaging Study from OSIRIS_pivot_Equipment.csv

Example of Imaging Study from OSIRIS_pivot_Equipment.csv

Example of Imaging Study from OSIRIS_pivot_CommonImage.csv

Example of Imaging Study from OSIRIS_pivot_CommonImage.csv

Example of Imaging Study from OSIRIS_pivot_CommonImage.csv

Example of Imaging Study from OSIRIS_pivot_CommonImage.csv

Example of Imaging Study from OSIRIS_pivot_CommonImage.csv

Example of Imaging Study from OSIRIS_pivot_CommonImage.csv, OSIRIS_pivot_Study.csv, OSIRIS_pivot_CTImage.csv, OSIRIS_pivot_CommonImage.csv

Example of Imaging Study from OSIRIS_pivot_CommonImage.csv, OSIRIS_pivot_Study.csv, OSIRIS_pivot_CTImage.csv, OSIRIS_pivot_CommonImage.csv

Example of Imaging Study from OSIRIS_pivot_CommonImage.csv, OSIRIS_pivot_Study.csv, OSIRIS_pivot_MRImage.csv, OSIRIS_pivot_CommonImage.csv

Example of Imaging Study from OSIRIS_pivot_CommonImage.csv, OSIRIS_pivot_Study.csv, OSIRIS_pivot_MRImage.csv, OSIRIS_pivot_CommonImage.csv

Example of Imaging Study from OSIRIS_pivot_CommonImage.csv, OSIRIS_pivot_Study.csv, OSIRIS_pivot_CTImage.csv, OSIRIS_pivot_CommonImage.csv

Example of Imaging Study from OSIRIS_pivot_Injection.csv

Example of Imaging Study from OSIRIS_pivot_Injection.csv

Example of OncoMedicalStatement from OSIRIS_pivot_Drug.csv

Example of Patient from OSIRIS_pivot_Patient.csv

Example of Patient from OSIRIS_pivot_Patient.csv

Example of Patient from OSIRIS_pivot_Patient.csv

Example of Patient from OSIRIS_pivot_Patient.csv

Example of Patient from OSIRIS_pivot_Patient.csv

Example of Patient from OSIRIS_pivot_Patient.csv

Example of Patient for radiotherapy

Example of SequencingAnalysis from OSIRIS_pivot_Analysis.csv

Example of SequencingAnalysis from OSIRIS_pivot_Analysis.csv

Example of SequencingAnalysis from OSIRIS_pivot_Analysis.csv

Example of SequencingDevice from OSIRIS_pivot_Analysis.csv

Example of SequencingDevice from OSIRIS_pivot_Analysis.csv

Example of SequencingDevice from OSIRIS_pivot_Analysis.csv

Example of Surgery from OSIRIS_pivot_Variant.csv

Example of Surgery from OSIRIS_pivot_Treatment.csv

Example of Surgery from OSIRIS_pivot_Treatment.csv

Example of Treatment from OSIRIS_pivot_Treatment.csv

Example of Treatment from OSIRIS_pivot_Treatment.csv

Example of Treatment from OSIRIS_pivot_Treatment.csv

Example of Surgery from OSIRIS_pivot_Variant.csv

Example of VitalStatus

Example of Instance from OSIRIS_pivot_Annotations.csv

Example of origin(organization) from OSIRIS_pivot_Patient.csv

Example of provider(organization) from OSIRIS_pivot_Patient.csv