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FHIR Osiris Implementation Guide
1.1.0 - trial-implementation

This page is part of the OSIRIS FHIR Implementation Guide (v1.1.0: Release) based on FHIR (HL7® FHIR® Standard) R4. This is the current published version. For a full list of available versions, see the Directory of published versions

CodeSystem: Osiris code system

Official URL: https://terminology.arkhn.com/osiris Version: 1.1.0
Draft as of 2025-04-03 Computable Name: OsirisCS

Custom code from osiris standard

This Code system is referenced in the content logical definition of the following value sets:

  • Cette terminologie de référence (CodeSystem) nest pas utilisée ici; elle peut être utilisée ailleurs (par exemple spécifications et/ou implémentations qui utilisent ce contenu)

Generated Narrative: CodeSystem OsirisCS

This code system https://terminology.arkhn.com/osiris defines the following codes:

CodeDisplayDéfinition
C39-1 CKIT CKIT
C39-2 b-catenine b-catenine
C39-3 CKIT/DOG1 CKIT/DOG1
C39-4 FOXL2/DICER FOXL2/DICER
C39-5 ETV6-NTRK3 ETV6-NTRK3
C39-6 MYB-NFIB MYB-NFIB
C39-7 PDGFRA/FGFR1 PDGFRA/FGFR1
C39-8 MDM2 MDM2
C39-9 N-MYC N-MYC
C39-10 C-MYC C-MYC
C39-11 BCR-ABL1 BCR-ABL1
C39-12 COL1A1 COL1A1
C39-13 DDIT3 DDIT3
C39-14 EWSR2 EWSR2
C39-15 SYT SYT
C39-16 CTNNB1 CTNNB1
C39-17 FUS FUS
C39-18 IGH-BCL2 IGH-BCL2
C39-19 JAZF1 JAZF1
C39-20 FOXO1A FOXO1A
C39-21 TFE3 TFE3
C39-22 HPV HPV
C39-23 Merkell Merkell
C39-24 EBER EBER
C39-25 PSA PSA
C39-26 CA125 CA125
C39-27 CA153 CA153
C39-28 CA199 CA199
C39-29 Ki67 Ki67
C39-30 Nb mitoses Nb mitoses
C39-31 RO RO
C39-32 RP RP
C39-33 HER2 HER2
C39-34 PD-L1 PD-L1
C39-35 AMHR2 AMHR2
C39-36 P53 P53
C39-37 BRCA BRCA
C39-38 MSI MSI
C39-39 CDK12 CDK12
C39-40 BRAF BRAF
C39-41 NRAS-KRAS NRAS-KRAS
C39-42 EGFR EGFR
C39-43 ALK ALK
C39-44 ROS1 ROS1
C39-45 C-MET C-MET
C39-46 ESR1 ESR1
C39-47 PAM50 PAM50
C39-48 ENDOPREDICT ENDOPREDICT
C37-1 Biology Biology
C37-2 Imaging Imaging
C37-3 Omic Omic
C37-4 Pathology Pathology
C27-1 5th edition UICC TNM Classification 5th edition
C27-2 6th edition UICC TNM Classification 6th edition
C27-3 7th edition UICC TNM Classification 7th edition
O59-1 Normal Normal sample
O59-2 Tumoral Tumoral sample
C60-1 Room temperature Room temperature
C60-2 Between 2 °C and 10 °C Between 2 °C and 10 °C
C60-3 Between -18 °C and -35 °C Between -18 °C and -35 °C
C60-4 Between -60 °C and -85 °C Between -60 °C and -85 °C
C60-5 Liquid nitrogen, -150 °C to -196 °C Liquid nitrogen, -150 °C to -196 °C
O6-1 ChIP-on-Chip ChIP-on-Chip
O6-2 ChIP-seq ChIP-seq
O6-3 DNA microarray DNA microarray
O6-4 DNA targeted panel sequencing DNA targeted panel sequencing
O6-5 Exome sequencing Exome sequencing
O6-6 Mass spectrometry Mass spectrometry
O6-7 MeDIP-Chip MeDIP-Chip
O6-8 MeDIP-seq MeDIP-seq
O6-9 Methylation microarray Methylation microarray
O6-10 RNA microarray RNA microarray
O6-11 RNA targeted panel sequencing RNA targeted panel sequencing
O6-12 RNA-seq RNA-seq
O6-13 RPPA RPPA
O6-14 Whole genome bisulfite sequencing Whole genome bisulfite sequencing
O6-15 Whole genome sequencing Whole genome sequencing
O6-16 miRNA microarray miRNA microarray
O90-1 Fusion transcript Fusion transcript
O90-3 Population frequency Population frequency
O90-4 Protein reference Protein reference
O90-5 Transcript reference Transcript reference
O90-6 Variant id Variant id
O19-1 MT Mitochondrial genetic material
O19-2 viral Viral genetic material
O19-3 bacterial Bacterial genetic material
O63-1 SIFT SIFT
O63-2 POLYPHEN2_HDIV POLYPHEN2_HDIV
O63-3 MutationTaster MutationTaster
O81-1 Pathogenic Pathogenic
O81-2 Likely pathogenic Likely pathogenic
O81-3 Uncertain significance Uncertain significance
O81-4 Likely benign Likely benign
O81-5 Benign Benign
O16-1 Experimental Experimental
O16-2 By biologist By biologist
O16-3 In silico In silico
O84-1 RawExpression RawExpression
O84-2 NormalizedExpression NormalizedExpression
O84-3 TPMExpression TPMExpression
O84-4 RPKMExpression RPKMExpression
O28-1 readthrough readthrough
C60-6 Other Other
C77-6 Other Other
O6-OTH Other Other
O13-OTH Other Other
O7-1 Affymetrix Cytoscan HD
O7-2 Affymetrix EMET Plus Premier Pack
O7-3 Affymetrix Genome-Wide Human SNP Array 5.0
O7-4 Affymetrix Genome-Wide Human SNP Array 6.0
O7-5 Affymetrix HT Human Genome U133A Array Plate Set
O7-6 Affymetrix Human Exon 1.0 ST
O7-7 Affymetrix Human Gene 1.0 ST
O7-8 Affymetrix Human Genome U219 Array Plate
O7-9 Affymetrix Human MIP 330K
O7-10 Affymetrix Human U133 Plus 2.0
O7-11 Affymetrix Human U133 Plus PM
O7-12 Affymetrix Mapping 100K Array Set
O7-13 Affymetrix Mapping 10K 2.0 Array Set
O7-14 Affymetrix Mapping 500K Array Set
O7-15 Affymetrix OncoScan FFPE Express 2.0
O7-16 Agilent 244K Custom Gene Expression G4502A-07
O7-17 Agilent 244K Custom Gene Expression G4502A-07-1
O7-18 Agilent 244K Custom Gene Expression G4502A-07-2
O7-19 Agilent 244K Custom Gene Expression G4502A-07-3
O7-20 Agilent 8 x 15K Human miRNA-specific microarray
O7-21 Agilent Human CGH 1x1M
O7-22 Agilent Human CGH 2x400K
O7-23 Agilent Human CGH 4x180K
O7-24 Agilent Human CGH 8x60K
O7-25 Agilent Human CNV 2x400K
O7-26 Agilent Human CNV Association 2x105K
O7-27 Agilent Human CpG Island Microarray Kit
O7-28 Agilent Human Genome 105A
O7-29 Agilent Human Genome 244A
O7-30 Agilent Human Genome 44K
O7-31 Agilent Human Genome CGH Custom Microaary 2x415K
O7-32 Agilent Human miRNA Microarray Kit (v2)
O7-33 Agilent Human Promoter ChIP-on-chip Microarray Set
O7-34 Agilent Human SpliceArray
O7-35 Agilent Whole Human Genome Oligo Microarray Kit
O7-36 Almac Human CRC
O7-37 capillary sequencing
O7-38 Complete Genomics
O7-39 Custom-designed cDNA array
O7-40 Custom-designed gene expression array
O7-41 Helicos sequencing
O7-42 HumanOmni2.5-8 BeadChip Kit
O7-43 Illumina GA sequencing
O7-44 Illumina goldengate methylation
O7-45 Illumina GoldenGate Methylation Cancer Panel I
O7-46 Illumina HiSeq
O7-47 Illumina HiSeq X Ten
O7-48 Illumina Human Omni1-Quad beadchip
O7-49 Illumina Human1M OmniQuad chip
O7-50 Illumina human1m-duo
O7-51 Illumina human510s-duo
O7-52 Illumina human660w-quad
O7-53 Illumina HumanCNV370-Duo v1.0 BeadChip
O7-54 Illumina humancytosnp-12
O7-55 Illumina HumanHap550
O7-56 Illumina HumanHT-12 v4.0 beadchip
O7-57 Illumina humanht-16
O7-58 Illumina humanht-17
O7-59 Illumina humanmethylation27
O7-60 Illumina HumanOmniExpress BeadChip
O7-61 Illumina HumanRef-8 v3.0 beadchip
O7-62 Illumina HumanWG-6 v3.0 beadchip
O7-63 Illumina Infinium HumanMethylation450
O7-64 Illumina microRNA Expression Profiling Panel
O7-65 Illumina MiSeq Personal Sequencer
O7-66 Ion Torrent PGM
O7-67 Ion Torrent Proton
O7-68 M.D. Anderson Reverse Phase Protein Array Core
O7-69 Microsatellite Instability Analysis
O7-70 nanoString
O7-71 Nimblegen CGS
O7-72 Nimblegen Gene Expression 12x135K
O7-73 Nimblegen Gene Expression 385K
O7-74 Nimblegen Gene Expression 4x72K
O7-75 Nimblegen Human CGH 2.1M Whole-Genome v2.0D Array
O7-76 Nimblegen Human CGH 3x720 Whole-Genome v3.0 Array
O7-77 Nimblegen Human Methylation 2.1M Whole-Genome sets
O7-78 Nimblegen Human Methylation 385K Whole-Genome sets
O7-79 PacBio RS sequencing
O7-80 PCR
O7-81 PCR and capillary sequencing
O7-82 qPCR
O7-83 Roche 454 sequencing
O7-84 Sequenom MassARRAY
O7-85 SOLiD sequencing
O7-86 Digital PCR
O7-87 NextSeq 500
O7-88 NovaSeq
O7-OTH Other
O10-1 Ion AmpliSeq Cancer Hotspot Panel v2
O10-2 Ion AmpliSeq Colon and Lung Cancer Research Panel v2
O10-3 Ion AmpliSeq Comprehensive Cancer Panel
O10-4 Ion AmpliSeq Oncomine Comprehensive Assay
O10-5 Ion AmpliSeq Oncomine Focus Assay
O10-6 Ion AmpliSeq TP53 Research Panel
O10-7 Lyric: Ion AmpliSeq Profiler
O10-8 QIAGEN GeneRead DNAseq Targeted Panels V2
O10-9 SAFIR02 Panel
O10-10 Mosc3
010-OTH Other