FHIR Osiris Implementation Guide
1.1.0 - trial-implementation
FHIR Osiris Implementation Guide
1.1.0 - trial-implementation
This page is part of the OSIRIS FHIR Implementation Guide (v1.1.0: Release) based on FHIR (HL7® FHIR® Standard) R4. This is the current published version. For a full list of available versions, see the Directory of published versions
| Draft as of 2025-04-03 |
<CodeSystem xmlns="http://hl7.org/fhir">
<id value="OsirisCS"/>
<text>
<status value="generated"/>
<div xmlns="http://www.w3.org/1999/xhtml"><p class="res-header-id"><b>Generated Narrative: CodeSystem OsirisCS</b></p><a name="OsirisCS"> </a><a name="hcOsirisCS"> </a><a name="OsirisCS-en-US"> </a><p>This code system <code>https://terminology.arkhn.com/osiris</code> defines the following codes:</p><table class="codes"><tr><td style="white-space:nowrap"><b>Code</b></td><td><b>Display</b></td><td><b>Définition</b></td></tr><tr><td style="white-space:nowrap">C39-1<a name="OsirisCS-C39-1"> </a></td><td>CKIT</td><td>CKIT</td></tr><tr><td style="white-space:nowrap">C39-2<a name="OsirisCS-C39-2"> </a></td><td>b-catenine</td><td>b-catenine</td></tr><tr><td style="white-space:nowrap">C39-3<a name="OsirisCS-C39-3"> </a></td><td>CKIT/DOG1</td><td>CKIT/DOG1</td></tr><tr><td style="white-space:nowrap">C39-4<a name="OsirisCS-C39-4"> </a></td><td>FOXL2/DICER</td><td>FOXL2/DICER</td></tr><tr><td style="white-space:nowrap">C39-5<a name="OsirisCS-C39-5"> </a></td><td>ETV6-NTRK3</td><td>ETV6-NTRK3</td></tr><tr><td style="white-space:nowrap">C39-6<a name="OsirisCS-C39-6"> </a></td><td>MYB-NFIB</td><td>MYB-NFIB</td></tr><tr><td style="white-space:nowrap">C39-7<a name="OsirisCS-C39-7"> </a></td><td>PDGFRA/FGFR1</td><td>PDGFRA/FGFR1</td></tr><tr><td style="white-space:nowrap">C39-8<a name="OsirisCS-C39-8"> </a></td><td>MDM2</td><td>MDM2</td></tr><tr><td style="white-space:nowrap">C39-9<a name="OsirisCS-C39-9"> </a></td><td>N-MYC</td><td>N-MYC</td></tr><tr><td style="white-space:nowrap">C39-10<a name="OsirisCS-C39-10"> </a></td><td>C-MYC</td><td>C-MYC</td></tr><tr><td style="white-space:nowrap">C39-11<a name="OsirisCS-C39-11"> </a></td><td>BCR-ABL1</td><td>BCR-ABL1</td></tr><tr><td style="white-space:nowrap">C39-12<a name="OsirisCS-C39-12"> </a></td><td>COL1A1</td><td>COL1A1</td></tr><tr><td style="white-space:nowrap">C39-13<a name="OsirisCS-C39-13"> </a></td><td>DDIT3</td><td>DDIT3</td></tr><tr><td style="white-space:nowrap">C39-14<a name="OsirisCS-C39-14"> </a></td><td>EWSR2</td><td>EWSR2</td></tr><tr><td style="white-space:nowrap">C39-15<a name="OsirisCS-C39-15"> </a></td><td>SYT</td><td>SYT</td></tr><tr><td style="white-space:nowrap">C39-16<a name="OsirisCS-C39-16"> </a></td><td>CTNNB1</td><td>CTNNB1</td></tr><tr><td style="white-space:nowrap">C39-17<a name="OsirisCS-C39-17"> </a></td><td>FUS</td><td>FUS</td></tr><tr><td style="white-space:nowrap">C39-18<a name="OsirisCS-C39-18"> </a></td><td>IGH-BCL2</td><td>IGH-BCL2</td></tr><tr><td style="white-space:nowrap">C39-19<a name="OsirisCS-C39-19"> </a></td><td>JAZF1</td><td>JAZF1</td></tr><tr><td style="white-space:nowrap">C39-20<a name="OsirisCS-C39-20"> </a></td><td>FOXO1A</td><td>FOXO1A</td></tr><tr><td style="white-space:nowrap">C39-21<a name="OsirisCS-C39-21"> </a></td><td>TFE3</td><td>TFE3</td></tr><tr><td style="white-space:nowrap">C39-22<a name="OsirisCS-C39-22"> </a></td><td>HPV</td><td>HPV</td></tr><tr><td style="white-space:nowrap">C39-23<a name="OsirisCS-C39-23"> </a></td><td>Merkell</td><td>Merkell</td></tr><tr><td style="white-space:nowrap">C39-24<a name="OsirisCS-C39-24"> </a></td><td>EBER</td><td>EBER</td></tr><tr><td style="white-space:nowrap">C39-25<a name="OsirisCS-C39-25"> </a></td><td>PSA</td><td>PSA</td></tr><tr><td style="white-space:nowrap">C39-26<a name="OsirisCS-C39-26"> </a></td><td>CA125</td><td>CA125</td></tr><tr><td style="white-space:nowrap">C39-27<a name="OsirisCS-C39-27"> </a></td><td>CA153</td><td>CA153</td></tr><tr><td style="white-space:nowrap">C39-28<a name="OsirisCS-C39-28"> </a></td><td>CA199</td><td>CA199</td></tr><tr><td style="white-space:nowrap">C39-29<a name="OsirisCS-C39-29"> </a></td><td>Ki67</td><td>Ki67</td></tr><tr><td style="white-space:nowrap">C39-30<a name="OsirisCS-C39-30"> </a></td><td>Nb mitoses</td><td>Nb mitoses</td></tr><tr><td style="white-space:nowrap">C39-31<a name="OsirisCS-C39-31"> </a></td><td>RO</td><td>RO</td></tr><tr><td style="white-space:nowrap">C39-32<a name="OsirisCS-C39-32"> </a></td><td>RP</td><td>RP</td></tr><tr><td style="white-space:nowrap">C39-33<a name="OsirisCS-C39-33"> </a></td><td>HER2</td><td>HER2</td></tr><tr><td style="white-space:nowrap">C39-34<a name="OsirisCS-C39-34"> </a></td><td>PD-L1</td><td>PD-L1</td></tr><tr><td style="white-space:nowrap">C39-35<a name="OsirisCS-C39-35"> </a></td><td>AMHR2</td><td>AMHR2</td></tr><tr><td style="white-space:nowrap">C39-36<a name="OsirisCS-C39-36"> </a></td><td>P53</td><td>P53</td></tr><tr><td style="white-space:nowrap">C39-37<a name="OsirisCS-C39-37"> </a></td><td>BRCA</td><td>BRCA</td></tr><tr><td style="white-space:nowrap">C39-38<a name="OsirisCS-C39-38"> </a></td><td>MSI</td><td>MSI</td></tr><tr><td style="white-space:nowrap">C39-39<a name="OsirisCS-C39-39"> </a></td><td>CDK12</td><td>CDK12</td></tr><tr><td style="white-space:nowrap">C39-40<a name="OsirisCS-C39-40"> </a></td><td>BRAF</td><td>BRAF</td></tr><tr><td style="white-space:nowrap">C39-41<a name="OsirisCS-C39-41"> </a></td><td>NRAS-KRAS</td><td>NRAS-KRAS</td></tr><tr><td style="white-space:nowrap">C39-42<a name="OsirisCS-C39-42"> </a></td><td>EGFR</td><td>EGFR</td></tr><tr><td style="white-space:nowrap">C39-43<a name="OsirisCS-C39-43"> </a></td><td>ALK</td><td>ALK</td></tr><tr><td style="white-space:nowrap">C39-44<a name="OsirisCS-C39-44"> </a></td><td>ROS1</td><td>ROS1</td></tr><tr><td style="white-space:nowrap">C39-45<a name="OsirisCS-C39-45"> </a></td><td>C-MET</td><td>C-MET</td></tr><tr><td style="white-space:nowrap">C39-46<a name="OsirisCS-C39-46"> </a></td><td>ESR1</td><td>ESR1</td></tr><tr><td style="white-space:nowrap">C39-47<a name="OsirisCS-C39-47"> </a></td><td>PAM50</td><td>PAM50</td></tr><tr><td style="white-space:nowrap">C39-48<a name="OsirisCS-C39-48"> </a></td><td>ENDOPREDICT</td><td>ENDOPREDICT</td></tr><tr><td style="white-space:nowrap">C37-1<a name="OsirisCS-C37-1"> </a></td><td>Biology</td><td>Biology</td></tr><tr><td style="white-space:nowrap">C37-2<a name="OsirisCS-C37-2"> </a></td><td>Imaging</td><td>Imaging</td></tr><tr><td style="white-space:nowrap">C37-3<a name="OsirisCS-C37-3"> </a></td><td>Omic</td><td>Omic</td></tr><tr><td style="white-space:nowrap">C37-4<a name="OsirisCS-C37-4"> </a></td><td>Pathology</td><td>Pathology</td></tr><tr><td style="white-space:nowrap">C27-1<a name="OsirisCS-C27-1"> </a></td><td>5th edition</td><td>UICC TNM Classification 5th edition</td></tr><tr><td style="white-space:nowrap">C27-2<a name="OsirisCS-C27-2"> </a></td><td>6th edition</td><td>UICC TNM Classification 6th edition</td></tr><tr><td style="white-space:nowrap">C27-3<a name="OsirisCS-C27-3"> </a></td><td>7th edition</td><td>UICC TNM Classification 7th edition</td></tr><tr><td style="white-space:nowrap">O59-1<a name="OsirisCS-O59-1"> </a></td><td>Normal</td><td>Normal sample</td></tr><tr><td style="white-space:nowrap">O59-2<a name="OsirisCS-O59-2"> </a></td><td>Tumoral</td><td>Tumoral sample</td></tr><tr><td style="white-space:nowrap">C60-1<a name="OsirisCS-C60-1"> </a></td><td>Room temperature</td><td>Room temperature</td></tr><tr><td style="white-space:nowrap">C60-2<a name="OsirisCS-C60-2"> </a></td><td>Between 2 °C and 10 °C</td><td>Between 2 °C and 10 °C</td></tr><tr><td style="white-space:nowrap">C60-3<a name="OsirisCS-C60-3"> </a></td><td>Between -18 °C and -35 °C</td><td>Between -18 °C and -35 °C</td></tr><tr><td style="white-space:nowrap">C60-4<a name="OsirisCS-C60-4"> </a></td><td>Between -60 °C and -85 °C</td><td>Between -60 °C and -85 °C</td></tr><tr><td style="white-space:nowrap">C60-5<a name="OsirisCS-C60-5"> </a></td><td>Liquid nitrogen, -150 °C to -196 °C</td><td>Liquid nitrogen, -150 °C to -196 °C</td></tr><tr><td style="white-space:nowrap">O6-1<a name="OsirisCS-O6-1"> </a></td><td>ChIP-on-Chip</td><td>ChIP-on-Chip</td></tr><tr><td style="white-space:nowrap">O6-2<a name="OsirisCS-O6-2"> </a></td><td>ChIP-seq</td><td>ChIP-seq</td></tr><tr><td style="white-space:nowrap">O6-3<a name="OsirisCS-O6-3"> </a></td><td>DNA microarray</td><td>DNA microarray</td></tr><tr><td style="white-space:nowrap">O6-4<a name="OsirisCS-O6-4"> </a></td><td>DNA targeted panel sequencing</td><td>DNA targeted panel sequencing</td></tr><tr><td style="white-space:nowrap">O6-5<a name="OsirisCS-O6-5"> </a></td><td>Exome sequencing</td><td>Exome sequencing</td></tr><tr><td style="white-space:nowrap">O6-6<a name="OsirisCS-O6-6"> </a></td><td>Mass spectrometry</td><td>Mass spectrometry</td></tr><tr><td style="white-space:nowrap">O6-7<a name="OsirisCS-O6-7"> </a></td><td>MeDIP-Chip</td><td>MeDIP-Chip</td></tr><tr><td style="white-space:nowrap">O6-8<a name="OsirisCS-O6-8"> </a></td><td>MeDIP-seq</td><td>MeDIP-seq</td></tr><tr><td style="white-space:nowrap">O6-9<a name="OsirisCS-O6-9"> </a></td><td>Methylation microarray</td><td>Methylation microarray</td></tr><tr><td style="white-space:nowrap">O6-10<a name="OsirisCS-O6-10"> </a></td><td>RNA microarray</td><td>RNA microarray</td></tr><tr><td style="white-space:nowrap">O6-11<a name="OsirisCS-O6-11"> </a></td><td>RNA targeted panel sequencing</td><td>RNA targeted panel sequencing</td></tr><tr><td style="white-space:nowrap">O6-12<a name="OsirisCS-O6-12"> </a></td><td>RNA-seq</td><td>RNA-seq</td></tr><tr><td style="white-space:nowrap">O6-13<a name="OsirisCS-O6-13"> </a></td><td>RPPA</td><td>RPPA</td></tr><tr><td style="white-space:nowrap">O6-14<a name="OsirisCS-O6-14"> </a></td><td>Whole genome bisulfite sequencing</td><td>Whole genome bisulfite sequencing</td></tr><tr><td style="white-space:nowrap">O6-15<a name="OsirisCS-O6-15"> </a></td><td>Whole genome sequencing</td><td>Whole genome sequencing</td></tr><tr><td style="white-space:nowrap">O6-16<a name="OsirisCS-O6-16"> </a></td><td>miRNA microarray</td><td>miRNA microarray</td></tr><tr><td style="white-space:nowrap">O90-1<a name="OsirisCS-O90-1"> </a></td><td>Fusion transcript</td><td>Fusion transcript</td></tr><tr><td style="white-space:nowrap">O90-3<a name="OsirisCS-O90-3"> </a></td><td>Population frequency</td><td>Population frequency</td></tr><tr><td style="white-space:nowrap">O90-4<a name="OsirisCS-O90-4"> </a></td><td>Protein reference</td><td>Protein reference</td></tr><tr><td style="white-space:nowrap">O90-5<a name="OsirisCS-O90-5"> </a></td><td>Transcript reference</td><td>Transcript reference</td></tr><tr><td style="white-space:nowrap">O90-6<a name="OsirisCS-O90-6"> </a></td><td>Variant id</td><td>Variant id</td></tr><tr><td style="white-space:nowrap">O19-1<a name="OsirisCS-O19-1"> </a></td><td>MT</td><td>Mitochondrial genetic material</td></tr><tr><td style="white-space:nowrap">O19-2<a name="OsirisCS-O19-2"> </a></td><td>viral</td><td>Viral genetic material</td></tr><tr><td style="white-space:nowrap">O19-3<a name="OsirisCS-O19-3"> </a></td><td>bacterial</td><td>Bacterial genetic material</td></tr><tr><td style="white-space:nowrap">O63-1<a name="OsirisCS-O63-1"> </a></td><td>SIFT</td><td>SIFT</td></tr><tr><td style="white-space:nowrap">O63-2<a name="OsirisCS-O63-2"> </a></td><td>POLYPHEN2_HDIV</td><td>POLYPHEN2_HDIV</td></tr><tr><td style="white-space:nowrap">O63-3<a name="OsirisCS-O63-3"> </a></td><td>MutationTaster</td><td>MutationTaster</td></tr><tr><td style="white-space:nowrap">O81-1<a name="OsirisCS-O81-1"> </a></td><td>Pathogenic</td><td>Pathogenic</td></tr><tr><td style="white-space:nowrap">O81-2<a name="OsirisCS-O81-2"> </a></td><td>Likely pathogenic</td><td>Likely pathogenic</td></tr><tr><td style="white-space:nowrap">O81-3<a name="OsirisCS-O81-3"> </a></td><td>Uncertain significance</td><td>Uncertain significance</td></tr><tr><td style="white-space:nowrap">O81-4<a name="OsirisCS-O81-4"> </a></td><td>Likely benign</td><td>Likely benign</td></tr><tr><td style="white-space:nowrap">O81-5<a name="OsirisCS-O81-5"> </a></td><td>Benign</td><td>Benign</td></tr><tr><td style="white-space:nowrap">O16-1<a name="OsirisCS-O16-1"> </a></td><td>Experimental</td><td>Experimental</td></tr><tr><td style="white-space:nowrap">O16-2<a name="OsirisCS-O16-2"> </a></td><td>By biologist</td><td>By biologist</td></tr><tr><td style="white-space:nowrap">O16-3<a name="OsirisCS-O16-3"> </a></td><td>In silico</td><td>In silico</td></tr><tr><td style="white-space:nowrap">O84-1<a name="OsirisCS-O84-1"> </a></td><td>RawExpression</td><td>RawExpression</td></tr><tr><td style="white-space:nowrap">O84-2<a name="OsirisCS-O84-2"> </a></td><td>NormalizedExpression</td><td>NormalizedExpression</td></tr><tr><td style="white-space:nowrap">O84-3<a name="OsirisCS-O84-3"> </a></td><td>TPMExpression</td><td>TPMExpression</td></tr><tr><td style="white-space:nowrap">O84-4<a name="OsirisCS-O84-4"> </a></td><td>RPKMExpression</td><td>RPKMExpression</td></tr><tr><td style="white-space:nowrap">O28-1<a name="OsirisCS-O28-1"> </a></td><td>readthrough</td><td>readthrough</td></tr><tr><td style="white-space:nowrap">C60-6<a name="OsirisCS-C60-6"> </a></td><td>Other</td><td>Other</td></tr><tr><td style="white-space:nowrap">C77-6<a name="OsirisCS-C77-6"> </a></td><td>Other</td><td>Other</td></tr><tr><td style="white-space:nowrap">O6-OTH<a name="OsirisCS-O6-OTH"> </a></td><td>Other</td><td>Other</td></tr><tr><td style="white-space:nowrap">O13-OTH<a name="OsirisCS-O13-OTH"> </a></td><td>Other</td><td>Other</td></tr><tr><td style="white-space:nowrap">O7-1<a name="OsirisCS-O7-1"> </a></td><td>Affymetrix Cytoscan HD</td><td/></tr><tr><td style="white-space:nowrap">O7-2<a name="OsirisCS-O7-2"> </a></td><td>Affymetrix EMET Plus Premier Pack</td><td/></tr><tr><td style="white-space:nowrap">O7-3<a name="OsirisCS-O7-3"> </a></td><td>Affymetrix Genome-Wide Human SNP Array 5.0</td><td/></tr><tr><td style="white-space:nowrap">O7-4<a name="OsirisCS-O7-4"> </a></td><td>Affymetrix Genome-Wide Human SNP Array 6.0</td><td/></tr><tr><td style="white-space:nowrap">O7-5<a name="OsirisCS-O7-5"> </a></td><td>Affymetrix HT Human Genome U133A Array Plate Set</td><td/></tr><tr><td style="white-space:nowrap">O7-6<a name="OsirisCS-O7-6"> </a></td><td>Affymetrix Human Exon 1.0 ST</td><td/></tr><tr><td style="white-space:nowrap">O7-7<a name="OsirisCS-O7-7"> </a></td><td>Affymetrix Human Gene 1.0 ST</td><td/></tr><tr><td style="white-space:nowrap">O7-8<a name="OsirisCS-O7-8"> </a></td><td>Affymetrix Human Genome U219 Array Plate</td><td/></tr><tr><td style="white-space:nowrap">O7-9<a name="OsirisCS-O7-9"> </a></td><td>Affymetrix Human MIP 330K</td><td/></tr><tr><td style="white-space:nowrap">O7-10<a name="OsirisCS-O7-10"> </a></td><td>Affymetrix Human U133 Plus 2.0</td><td/></tr><tr><td style="white-space:nowrap">O7-11<a name="OsirisCS-O7-11"> </a></td><td>Affymetrix Human U133 Plus PM</td><td/></tr><tr><td style="white-space:nowrap">O7-12<a name="OsirisCS-O7-12"> </a></td><td>Affymetrix Mapping 100K Array Set</td><td/></tr><tr><td style="white-space:nowrap">O7-13<a name="OsirisCS-O7-13"> </a></td><td>Affymetrix Mapping 10K 2.0 Array Set</td><td/></tr><tr><td style="white-space:nowrap">O7-14<a name="OsirisCS-O7-14"> </a></td><td>Affymetrix Mapping 500K Array Set</td><td/></tr><tr><td style="white-space:nowrap">O7-15<a name="OsirisCS-O7-15"> </a></td><td>Affymetrix OncoScan FFPE Express 2.0</td><td/></tr><tr><td style="white-space:nowrap">O7-16<a name="OsirisCS-O7-16"> </a></td><td>Agilent 244K Custom Gene Expression G4502A-07</td><td/></tr><tr><td style="white-space:nowrap">O7-17<a name="OsirisCS-O7-17"> </a></td><td>Agilent 244K Custom Gene Expression G4502A-07-1</td><td/></tr><tr><td style="white-space:nowrap">O7-18<a name="OsirisCS-O7-18"> </a></td><td>Agilent 244K Custom Gene Expression G4502A-07-2</td><td/></tr><tr><td style="white-space:nowrap">O7-19<a name="OsirisCS-O7-19"> </a></td><td>Agilent 244K Custom Gene Expression G4502A-07-3</td><td/></tr><tr><td style="white-space:nowrap">O7-20<a name="OsirisCS-O7-20"> </a></td><td>Agilent 8 x 15K Human miRNA-specific microarray</td><td/></tr><tr><td style="white-space:nowrap">O7-21<a name="OsirisCS-O7-21"> </a></td><td>Agilent Human CGH 1x1M</td><td/></tr><tr><td style="white-space:nowrap">O7-22<a name="OsirisCS-O7-22"> </a></td><td>Agilent Human CGH 2x400K</td><td/></tr><tr><td style="white-space:nowrap">O7-23<a name="OsirisCS-O7-23"> </a></td><td>Agilent Human CGH 4x180K</td><td/></tr><tr><td style="white-space:nowrap">O7-24<a name="OsirisCS-O7-24"> </a></td><td>Agilent Human CGH 8x60K</td><td/></tr><tr><td style="white-space:nowrap">O7-25<a name="OsirisCS-O7-25"> </a></td><td>Agilent Human CNV 2x400K</td><td/></tr><tr><td style="white-space:nowrap">O7-26<a name="OsirisCS-O7-26"> </a></td><td>Agilent Human CNV Association 2x105K</td><td/></tr><tr><td style="white-space:nowrap">O7-27<a name="OsirisCS-O7-27"> </a></td><td>Agilent Human CpG Island Microarray Kit</td><td/></tr><tr><td style="white-space:nowrap">O7-28<a name="OsirisCS-O7-28"> </a></td><td>Agilent Human Genome 105A</td><td/></tr><tr><td style="white-space:nowrap">O7-29<a name="OsirisCS-O7-29"> </a></td><td>Agilent Human Genome 244A</td><td/></tr><tr><td style="white-space:nowrap">O7-30<a name="OsirisCS-O7-30"> </a></td><td>Agilent Human Genome 44K</td><td/></tr><tr><td style="white-space:nowrap">O7-31<a name="OsirisCS-O7-31"> </a></td><td>Agilent Human Genome CGH Custom Microaary 2x415K</td><td/></tr><tr><td style="white-space:nowrap">O7-32<a name="OsirisCS-O7-32"> </a></td><td>Agilent Human miRNA Microarray Kit (v2)</td><td/></tr><tr><td style="white-space:nowrap">O7-33<a name="OsirisCS-O7-33"> </a></td><td>Agilent Human Promoter ChIP-on-chip Microarray Set</td><td/></tr><tr><td style="white-space:nowrap">O7-34<a name="OsirisCS-O7-34"> </a></td><td>Agilent Human SpliceArray</td><td/></tr><tr><td style="white-space:nowrap">O7-35<a name="OsirisCS-O7-35"> </a></td><td>Agilent Whole Human Genome Oligo Microarray Kit</td><td/></tr><tr><td style="white-space:nowrap">O7-36<a name="OsirisCS-O7-36"> </a></td><td>Almac Human CRC</td><td/></tr><tr><td style="white-space:nowrap">O7-37<a name="OsirisCS-O7-37"> </a></td><td>capillary sequencing</td><td/></tr><tr><td style="white-space:nowrap">O7-38<a name="OsirisCS-O7-38"> </a></td><td>Complete Genomics</td><td/></tr><tr><td style="white-space:nowrap">O7-39<a name="OsirisCS-O7-39"> </a></td><td>Custom-designed cDNA array</td><td/></tr><tr><td style="white-space:nowrap">O7-40<a name="OsirisCS-O7-40"> </a></td><td>Custom-designed gene expression array</td><td/></tr><tr><td style="white-space:nowrap">O7-41<a name="OsirisCS-O7-41"> </a></td><td>Helicos sequencing</td><td/></tr><tr><td style="white-space:nowrap">O7-42<a name="OsirisCS-O7-42"> </a></td><td>HumanOmni2.5-8 BeadChip Kit</td><td/></tr><tr><td style="white-space:nowrap">O7-43<a name="OsirisCS-O7-43"> </a></td><td>Illumina GA sequencing</td><td/></tr><tr><td style="white-space:nowrap">O7-44<a name="OsirisCS-O7-44"> </a></td><td>Illumina goldengate methylation</td><td/></tr><tr><td style="white-space:nowrap">O7-45<a name="OsirisCS-O7-45"> </a></td><td>Illumina GoldenGate Methylation Cancer Panel I</td><td/></tr><tr><td style="white-space:nowrap">O7-46<a name="OsirisCS-O7-46"> </a></td><td>Illumina HiSeq</td><td/></tr><tr><td style="white-space:nowrap">O7-47<a name="OsirisCS-O7-47"> </a></td><td>Illumina HiSeq X Ten</td><td/></tr><tr><td style="white-space:nowrap">O7-48<a name="OsirisCS-O7-48"> </a></td><td>Illumina Human Omni1-Quad beadchip</td><td/></tr><tr><td style="white-space:nowrap">O7-49<a name="OsirisCS-O7-49"> </a></td><td>Illumina Human1M OmniQuad chip</td><td/></tr><tr><td style="white-space:nowrap">O7-50<a name="OsirisCS-O7-50"> </a></td><td>Illumina human1m-duo</td><td/></tr><tr><td style="white-space:nowrap">O7-51<a name="OsirisCS-O7-51"> </a></td><td>Illumina human510s-duo</td><td/></tr><tr><td style="white-space:nowrap">O7-52<a name="OsirisCS-O7-52"> </a></td><td>Illumina human660w-quad</td><td/></tr><tr><td style="white-space:nowrap">O7-53<a name="OsirisCS-O7-53"> </a></td><td>Illumina HumanCNV370-Duo v1.0 BeadChip</td><td/></tr><tr><td style="white-space:nowrap">O7-54<a name="OsirisCS-O7-54"> </a></td><td>Illumina humancytosnp-12</td><td/></tr><tr><td style="white-space:nowrap">O7-55<a name="OsirisCS-O7-55"> </a></td><td>Illumina HumanHap550</td><td/></tr><tr><td style="white-space:nowrap">O7-56<a name="OsirisCS-O7-56"> </a></td><td>Illumina HumanHT-12 v4.0 beadchip</td><td/></tr><tr><td style="white-space:nowrap">O7-57<a name="OsirisCS-O7-57"> </a></td><td>Illumina humanht-16</td><td/></tr><tr><td style="white-space:nowrap">O7-58<a name="OsirisCS-O7-58"> </a></td><td>Illumina humanht-17</td><td/></tr><tr><td style="white-space:nowrap">O7-59<a name="OsirisCS-O7-59"> </a></td><td>Illumina humanmethylation27</td><td/></tr><tr><td style="white-space:nowrap">O7-60<a name="OsirisCS-O7-60"> </a></td><td>Illumina HumanOmniExpress BeadChip</td><td/></tr><tr><td style="white-space:nowrap">O7-61<a name="OsirisCS-O7-61"> </a></td><td>Illumina HumanRef-8 v3.0 beadchip</td><td/></tr><tr><td style="white-space:nowrap">O7-62<a name="OsirisCS-O7-62"> </a></td><td>Illumina HumanWG-6 v3.0 beadchip</td><td/></tr><tr><td style="white-space:nowrap">O7-63<a name="OsirisCS-O7-63"> </a></td><td>Illumina Infinium HumanMethylation450</td><td/></tr><tr><td style="white-space:nowrap">O7-64<a name="OsirisCS-O7-64"> </a></td><td>Illumina microRNA Expression Profiling Panel</td><td/></tr><tr><td style="white-space:nowrap">O7-65<a name="OsirisCS-O7-65"> </a></td><td>Illumina MiSeq Personal Sequencer</td><td/></tr><tr><td style="white-space:nowrap">O7-66<a name="OsirisCS-O7-66"> </a></td><td>Ion Torrent PGM</td><td/></tr><tr><td style="white-space:nowrap">O7-67<a name="OsirisCS-O7-67"> </a></td><td>Ion Torrent Proton</td><td/></tr><tr><td style="white-space:nowrap">O7-68<a name="OsirisCS-O7-68"> </a></td><td>M.D. Anderson Reverse Phase Protein Array Core</td><td/></tr><tr><td style="white-space:nowrap">O7-69<a name="OsirisCS-O7-69"> </a></td><td>Microsatellite Instability Analysis</td><td/></tr><tr><td style="white-space:nowrap">O7-70<a name="OsirisCS-O7-70"> </a></td><td>nanoString</td><td/></tr><tr><td style="white-space:nowrap">O7-71<a name="OsirisCS-O7-71"> </a></td><td>Nimblegen CGS</td><td/></tr><tr><td style="white-space:nowrap">O7-72<a name="OsirisCS-O7-72"> </a></td><td>Nimblegen Gene Expression 12x135K</td><td/></tr><tr><td style="white-space:nowrap">O7-73<a name="OsirisCS-O7-73"> </a></td><td>Nimblegen Gene Expression 385K</td><td/></tr><tr><td style="white-space:nowrap">O7-74<a name="OsirisCS-O7-74"> </a></td><td>Nimblegen Gene Expression 4x72K</td><td/></tr><tr><td style="white-space:nowrap">O7-75<a name="OsirisCS-O7-75"> </a></td><td>Nimblegen Human CGH 2.1M Whole-Genome v2.0D Array</td><td/></tr><tr><td style="white-space:nowrap">O7-76<a name="OsirisCS-O7-76"> </a></td><td>Nimblegen Human CGH 3x720 Whole-Genome v3.0 Array</td><td/></tr><tr><td style="white-space:nowrap">O7-77<a name="OsirisCS-O7-77"> </a></td><td>Nimblegen Human Methylation 2.1M Whole-Genome sets</td><td/></tr><tr><td style="white-space:nowrap">O7-78<a name="OsirisCS-O7-78"> </a></td><td>Nimblegen Human Methylation 385K Whole-Genome sets</td><td/></tr><tr><td style="white-space:nowrap">O7-79<a name="OsirisCS-O7-79"> </a></td><td>PacBio RS sequencing</td><td/></tr><tr><td style="white-space:nowrap">O7-80<a name="OsirisCS-O7-80"> </a></td><td>PCR</td><td/></tr><tr><td style="white-space:nowrap">O7-81<a name="OsirisCS-O7-81"> </a></td><td>PCR and capillary sequencing</td><td/></tr><tr><td style="white-space:nowrap">O7-82<a name="OsirisCS-O7-82"> </a></td><td>qPCR</td><td/></tr><tr><td style="white-space:nowrap">O7-83<a name="OsirisCS-O7-83"> </a></td><td>Roche 454 sequencing</td><td/></tr><tr><td style="white-space:nowrap">O7-84<a name="OsirisCS-O7-84"> </a></td><td>Sequenom MassARRAY</td><td/></tr><tr><td style="white-space:nowrap">O7-85<a name="OsirisCS-O7-85"> </a></td><td>SOLiD sequencing</td><td/></tr><tr><td style="white-space:nowrap">O7-86<a name="OsirisCS-O7-86"> </a></td><td>Digital PCR</td><td/></tr><tr><td style="white-space:nowrap">O7-87<a name="OsirisCS-O7-87"> </a></td><td>NextSeq 500</td><td/></tr><tr><td style="white-space:nowrap">O7-88<a name="OsirisCS-O7-88"> </a></td><td>NovaSeq</td><td/></tr><tr><td style="white-space:nowrap">O7-OTH<a name="OsirisCS-O7-OTH"> </a></td><td>Other</td><td/></tr><tr><td style="white-space:nowrap">O10-1<a name="OsirisCS-O10-1"> </a></td><td>Ion AmpliSeq Cancer Hotspot Panel v2</td><td/></tr><tr><td style="white-space:nowrap">O10-2<a name="OsirisCS-O10-2"> </a></td><td>Ion AmpliSeq Colon and Lung Cancer Research Panel v2</td><td/></tr><tr><td style="white-space:nowrap">O10-3<a name="OsirisCS-O10-3"> </a></td><td>Ion AmpliSeq Comprehensive Cancer Panel</td><td/></tr><tr><td style="white-space:nowrap">O10-4<a name="OsirisCS-O10-4"> </a></td><td>Ion AmpliSeq Oncomine Comprehensive Assay</td><td/></tr><tr><td style="white-space:nowrap">O10-5<a name="OsirisCS-O10-5"> </a></td><td>Ion AmpliSeq Oncomine Focus Assay</td><td/></tr><tr><td style="white-space:nowrap">O10-6<a name="OsirisCS-O10-6"> </a></td><td>Ion AmpliSeq TP53 Research Panel</td><td/></tr><tr><td style="white-space:nowrap">O10-7<a name="OsirisCS-O10-7"> </a></td><td>Lyric: Ion AmpliSeq Profiler</td><td/></tr><tr><td style="white-space:nowrap">O10-8<a name="OsirisCS-O10-8"> </a></td><td>QIAGEN GeneRead DNAseq Targeted Panels V2</td><td/></tr><tr><td style="white-space:nowrap">O10-9<a name="OsirisCS-O10-9"> </a></td><td>SAFIR02 Panel</td><td/></tr><tr><td style="white-space:nowrap">O10-10<a name="OsirisCS-O10-10"> </a></td><td>Mosc3</td><td/></tr><tr><td style="white-space:nowrap">010-OTH<a name="OsirisCS-010-OTH"> </a></td><td>Other</td><td/></tr></table></div>
</text>
<url value="https://terminology.arkhn.com/osiris"/>
<version value="1.1.0"/>
<name value="OsirisCS"/>
<title value="Osiris code system"/>
<status value="draft"/>
<date value="2025-04-03T15:16:31+02:00"/>
<publisher value="institutcancer"/>
<contact>
<name value="institutcancer"/>
<telecom>
<system value="url"/>
<value value="http://cancer.fr"/>
</telecom>
<telecom>
<system value="email"/>
<value value="osiris@institutcancer.fr"/>
</telecom>
</contact>
<contact>
<name value="Aurélien JOBARD"/>
<telecom>
<system value="email"/>
<value value="osiris@institutcancer.fr"/>
</telecom>
</contact>
<description value="Custom code from osiris standard"/>
<content value="complete"/>
<count value="206"/>
<concept>
<code value="C39-1"/>
<display value="CKIT"/>
<definition value="CKIT"/>
</concept>
<concept>
<code value="C39-2"/>
<display value="b-catenine"/>
<definition value="b-catenine"/>
</concept>
<concept>
<code value="C39-3"/>
<display value="CKIT/DOG1"/>
<definition value="CKIT/DOG1"/>
</concept>
<concept>
<code value="C39-4"/>
<display value="FOXL2/DICER"/>
<definition value="FOXL2/DICER"/>
</concept>
<concept>
<code value="C39-5"/>
<display value="ETV6-NTRK3"/>
<definition value="ETV6-NTRK3"/>
</concept>
<concept>
<code value="C39-6"/>
<display value="MYB-NFIB"/>
<definition value="MYB-NFIB"/>
</concept>
<concept>
<code value="C39-7"/>
<display value="PDGFRA/FGFR1"/>
<definition value="PDGFRA/FGFR1"/>
</concept>
<concept>
<code value="C39-8"/>
<display value="MDM2"/>
<definition value="MDM2"/>
</concept>
<concept>
<code value="C39-9"/>
<display value="N-MYC"/>
<definition value="N-MYC"/>
</concept>
<concept>
<code value="C39-10"/>
<display value="C-MYC"/>
<definition value="C-MYC"/>
</concept>
<concept>
<code value="C39-11"/>
<display value="BCR-ABL1"/>
<definition value="BCR-ABL1"/>
</concept>
<concept>
<code value="C39-12"/>
<display value="COL1A1"/>
<definition value="COL1A1"/>
</concept>
<concept>
<code value="C39-13"/>
<display value="DDIT3"/>
<definition value="DDIT3"/>
</concept>
<concept>
<code value="C39-14"/>
<display value="EWSR2"/>
<definition value="EWSR2"/>
</concept>
<concept>
<code value="C39-15"/>
<display value="SYT"/>
<definition value="SYT"/>
</concept>
<concept>
<code value="C39-16"/>
<display value="CTNNB1"/>
<definition value="CTNNB1"/>
</concept>
<concept>
<code value="C39-17"/>
<display value="FUS"/>
<definition value="FUS"/>
</concept>
<concept>
<code value="C39-18"/>
<display value="IGH-BCL2"/>
<definition value="IGH-BCL2"/>
</concept>
<concept>
<code value="C39-19"/>
<display value="JAZF1"/>
<definition value="JAZF1"/>
</concept>
<concept>
<code value="C39-20"/>
<display value="FOXO1A"/>
<definition value="FOXO1A"/>
</concept>
<concept>
<code value="C39-21"/>
<display value="TFE3"/>
<definition value="TFE3"/>
</concept>
<concept>
<code value="C39-22"/>
<display value="HPV"/>
<definition value="HPV"/>
</concept>
<concept>
<code value="C39-23"/>
<display value="Merkell"/>
<definition value="Merkell"/>
</concept>
<concept>
<code value="C39-24"/>
<display value="EBER"/>
<definition value="EBER"/>
</concept>
<concept>
<code value="C39-25"/>
<display value="PSA"/>
<definition value="PSA"/>
</concept>
<concept>
<code value="C39-26"/>
<display value="CA125"/>
<definition value="CA125"/>
</concept>
<concept>
<code value="C39-27"/>
<display value="CA153"/>
<definition value="CA153"/>
</concept>
<concept>
<code value="C39-28"/>
<display value="CA199"/>
<definition value="CA199"/>
</concept>
<concept>
<code value="C39-29"/>
<display value="Ki67"/>
<definition value="Ki67"/>
</concept>
<concept>
<code value="C39-30"/>
<display value="Nb mitoses"/>
<definition value="Nb mitoses"/>
</concept>
<concept>
<code value="C39-31"/>
<display value="RO"/>
<definition value="RO"/>
</concept>
<concept>
<code value="C39-32"/>
<display value="RP"/>
<definition value="RP"/>
</concept>
<concept>
<code value="C39-33"/>
<display value="HER2"/>
<definition value="HER2"/>
</concept>
<concept>
<code value="C39-34"/>
<display value="PD-L1"/>
<definition value="PD-L1"/>
</concept>
<concept>
<code value="C39-35"/>
<display value="AMHR2"/>
<definition value="AMHR2"/>
</concept>
<concept>
<code value="C39-36"/>
<display value="P53"/>
<definition value="P53"/>
</concept>
<concept>
<code value="C39-37"/>
<display value="BRCA"/>
<definition value="BRCA"/>
</concept>
<concept>
<code value="C39-38"/>
<display value="MSI"/>
<definition value="MSI"/>
</concept>
<concept>
<code value="C39-39"/>
<display value="CDK12"/>
<definition value="CDK12"/>
</concept>
<concept>
<code value="C39-40"/>
<display value="BRAF"/>
<definition value="BRAF"/>
</concept>
<concept>
<code value="C39-41"/>
<display value="NRAS-KRAS"/>
<definition value="NRAS-KRAS"/>
</concept>
<concept>
<code value="C39-42"/>
<display value="EGFR"/>
<definition value="EGFR"/>
</concept>
<concept>
<code value="C39-43"/>
<display value="ALK"/>
<definition value="ALK"/>
</concept>
<concept>
<code value="C39-44"/>
<display value="ROS1"/>
<definition value="ROS1"/>
</concept>
<concept>
<code value="C39-45"/>
<display value="C-MET"/>
<definition value="C-MET"/>
</concept>
<concept>
<code value="C39-46"/>
<display value="ESR1"/>
<definition value="ESR1"/>
</concept>
<concept>
<code value="C39-47"/>
<display value="PAM50"/>
<definition value="PAM50"/>
</concept>
<concept>
<code value="C39-48"/>
<display value="ENDOPREDICT"/>
<definition value="ENDOPREDICT"/>
</concept>
<concept>
<code value="C37-1"/>
<display value="Biology"/>
<definition value="Biology"/>
</concept>
<concept>
<code value="C37-2"/>
<display value="Imaging"/>
<definition value="Imaging"/>
</concept>
<concept>
<code value="C37-3"/>
<display value="Omic"/>
<definition value="Omic"/>
</concept>
<concept>
<code value="C37-4"/>
<display value="Pathology"/>
<definition value="Pathology"/>
</concept>
<concept>
<code value="C27-1"/>
<display value="5th edition"/>
<definition value="UICC TNM Classification 5th edition"/>
</concept>
<concept>
<code value="C27-2"/>
<display value="6th edition"/>
<definition value="UICC TNM Classification 6th edition"/>
</concept>
<concept>
<code value="C27-3"/>
<display value="7th edition"/>
<definition value="UICC TNM Classification 7th edition"/>
</concept>
<concept>
<code value="O59-1"/>
<display value="Normal"/>
<definition value="Normal sample"/>
</concept>
<concept>
<code value="O59-2"/>
<display value="Tumoral"/>
<definition value="Tumoral sample"/>
</concept>
<concept>
<code value="C60-1"/>
<display value="Room temperature"/>
<definition value="Room temperature"/>
</concept>
<concept>
<code value="C60-2"/>
<display value="Between 2 °C and 10 °C"/>
<definition value="Between 2 °C and 10 °C"/>
</concept>
<concept>
<code value="C60-3"/>
<display value="Between -18 °C and -35 °C"/>
<definition value="Between -18 °C and -35 °C"/>
</concept>
<concept>
<code value="C60-4"/>
<display value="Between -60 °C and -85 °C"/>
<definition value="Between -60 °C and -85 °C"/>
</concept>
<concept>
<code value="C60-5"/>
<display value="Liquid nitrogen, -150 °C to -196 °C"/>
<definition value="Liquid nitrogen, -150 °C to -196 °C"/>
</concept>
<concept>
<code value="O6-1"/>
<display value="ChIP-on-Chip"/>
<definition value="ChIP-on-Chip"/>
</concept>
<concept>
<code value="O6-2"/>
<display value="ChIP-seq"/>
<definition value="ChIP-seq"/>
</concept>
<concept>
<code value="O6-3"/>
<display value="DNA microarray"/>
<definition value="DNA microarray"/>
</concept>
<concept>
<code value="O6-4"/>
<display value="DNA targeted panel sequencing"/>
<definition value="DNA targeted panel sequencing"/>
</concept>
<concept>
<code value="O6-5"/>
<display value="Exome sequencing"/>
<definition value="Exome sequencing"/>
</concept>
<concept>
<code value="O6-6"/>
<display value="Mass spectrometry"/>
<definition value="Mass spectrometry"/>
</concept>
<concept>
<code value="O6-7"/>
<display value="MeDIP-Chip"/>
<definition value="MeDIP-Chip"/>
</concept>
<concept>
<code value="O6-8"/>
<display value="MeDIP-seq"/>
<definition value="MeDIP-seq"/>
</concept>
<concept>
<code value="O6-9"/>
<display value="Methylation microarray"/>
<definition value="Methylation microarray"/>
</concept>
<concept>
<code value="O6-10"/>
<display value="RNA microarray"/>
<definition value="RNA microarray"/>
</concept>
<concept>
<code value="O6-11"/>
<display value="RNA targeted panel sequencing"/>
<definition value="RNA targeted panel sequencing"/>
</concept>
<concept>
<code value="O6-12"/>
<display value="RNA-seq"/>
<definition value="RNA-seq"/>
</concept>
<concept>
<code value="O6-13"/>
<display value="RPPA"/>
<definition value="RPPA"/>
</concept>
<concept>
<code value="O6-14"/>
<display value="Whole genome bisulfite sequencing"/>
<definition value="Whole genome bisulfite sequencing"/>
</concept>
<concept>
<code value="O6-15"/>
<display value="Whole genome sequencing"/>
<definition value="Whole genome sequencing"/>
</concept>
<concept>
<code value="O6-16"/>
<display value="miRNA microarray"/>
<definition value="miRNA microarray"/>
</concept>
<concept>
<code value="O90-1"/>
<display value="Fusion transcript"/>
<definition value="Fusion transcript"/>
</concept>
<concept>
<code value="O90-3"/>
<display value="Population frequency"/>
<definition value="Population frequency"/>
</concept>
<concept>
<code value="O90-4"/>
<display value="Protein reference"/>
<definition value="Protein reference"/>
</concept>
<concept>
<code value="O90-5"/>
<display value="Transcript reference"/>
<definition value="Transcript reference"/>
</concept>
<concept>
<code value="O90-6"/>
<display value="Variant id"/>
<definition value="Variant id"/>
</concept>
<concept>
<code value="O19-1"/>
<display value="MT"/>
<definition value="Mitochondrial genetic material"/>
</concept>
<concept>
<code value="O19-2"/>
<display value="viral"/>
<definition value="Viral genetic material"/>
</concept>
<concept>
<code value="O19-3"/>
<display value="bacterial"/>
<definition value="Bacterial genetic material"/>
</concept>
<concept>
<code value="O63-1"/>
<display value="SIFT"/>
<definition value="SIFT"/>
</concept>
<concept>
<code value="O63-2"/>
<display value="POLYPHEN2_HDIV"/>
<definition value="POLYPHEN2_HDIV"/>
</concept>
<concept>
<code value="O63-3"/>
<display value="MutationTaster"/>
<definition value="MutationTaster"/>
</concept>
<concept>
<code value="O81-1"/>
<display value="Pathogenic"/>
<definition value="Pathogenic"/>
</concept>
<concept>
<code value="O81-2"/>
<display value="Likely pathogenic"/>
<definition value="Likely pathogenic"/>
</concept>
<concept>
<code value="O81-3"/>
<display value="Uncertain significance"/>
<definition value="Uncertain significance"/>
</concept>
<concept>
<code value="O81-4"/>
<display value="Likely benign"/>
<definition value="Likely benign"/>
</concept>
<concept>
<code value="O81-5"/>
<display value="Benign"/>
<definition value="Benign"/>
</concept>
<concept>
<code value="O16-1"/>
<display value="Experimental"/>
<definition value="Experimental"/>
</concept>
<concept>
<code value="O16-2"/>
<display value="By biologist"/>
<definition value="By biologist"/>
</concept>
<concept>
<code value="O16-3"/>
<display value="In silico"/>
<definition value="In silico"/>
</concept>
<concept>
<code value="O84-1"/>
<display value="RawExpression"/>
<definition value="RawExpression"/>
</concept>
<concept>
<code value="O84-2"/>
<display value="NormalizedExpression"/>
<definition value="NormalizedExpression"/>
</concept>
<concept>
<code value="O84-3"/>
<display value="TPMExpression"/>
<definition value="TPMExpression"/>
</concept>
<concept>
<code value="O84-4"/>
<display value="RPKMExpression"/>
<definition value="RPKMExpression"/>
</concept>
<concept>
<code value="O28-1"/>
<display value="readthrough"/>
<definition value="readthrough"/>
</concept>
<concept>
<code value="C60-6"/>
<display value="Other"/>
<definition value="Other"/>
</concept>
<concept>
<code value="C77-6"/>
<display value="Other"/>
<definition value="Other"/>
</concept>
<concept>
<code value="O6-OTH"/>
<display value="Other"/>
<definition value="Other"/>
</concept>
<concept>
<code value="O13-OTH"/>
<display value="Other"/>
<definition value="Other"/>
</concept>
<concept>
<code value="O7-1"/>
<display value="Affymetrix Cytoscan HD"/>
</concept>
<concept>
<code value="O7-2"/>
<display value="Affymetrix EMET Plus Premier Pack"/>
</concept>
<concept>
<code value="O7-3"/>
<display value="Affymetrix Genome-Wide Human SNP Array 5.0"/>
</concept>
<concept>
<code value="O7-4"/>
<display value="Affymetrix Genome-Wide Human SNP Array 6.0"/>
</concept>
<concept>
<code value="O7-5"/>
<display value="Affymetrix HT Human Genome U133A Array Plate Set"/>
</concept>
<concept>
<code value="O7-6"/>
<display value="Affymetrix Human Exon 1.0 ST"/>
</concept>
<concept>
<code value="O7-7"/>
<display value="Affymetrix Human Gene 1.0 ST"/>
</concept>
<concept>
<code value="O7-8"/>
<display value="Affymetrix Human Genome U219 Array Plate"/>
</concept>
<concept>
<code value="O7-9"/>
<display value="Affymetrix Human MIP 330K"/>
</concept>
<concept>
<code value="O7-10"/>
<display value="Affymetrix Human U133 Plus 2.0"/>
</concept>
<concept>
<code value="O7-11"/>
<display value="Affymetrix Human U133 Plus PM"/>
</concept>
<concept>
<code value="O7-12"/>
<display value="Affymetrix Mapping 100K Array Set"/>
</concept>
<concept>
<code value="O7-13"/>
<display value="Affymetrix Mapping 10K 2.0 Array Set"/>
</concept>
<concept>
<code value="O7-14"/>
<display value="Affymetrix Mapping 500K Array Set"/>
</concept>
<concept>
<code value="O7-15"/>
<display value="Affymetrix OncoScan FFPE Express 2.0"/>
</concept>
<concept>
<code value="O7-16"/>
<display value="Agilent 244K Custom Gene Expression G4502A-07"/>
</concept>
<concept>
<code value="O7-17"/>
<display value="Agilent 244K Custom Gene Expression G4502A-07-1"/>
</concept>
<concept>
<code value="O7-18"/>
<display value="Agilent 244K Custom Gene Expression G4502A-07-2"/>
</concept>
<concept>
<code value="O7-19"/>
<display value="Agilent 244K Custom Gene Expression G4502A-07-3"/>
</concept>
<concept>
<code value="O7-20"/>
<display value="Agilent 8 x 15K Human miRNA-specific microarray"/>
</concept>
<concept>
<code value="O7-21"/>
<display value="Agilent Human CGH 1x1M"/>
</concept>
<concept>
<code value="O7-22"/>
<display value="Agilent Human CGH 2x400K"/>
</concept>
<concept>
<code value="O7-23"/>
<display value="Agilent Human CGH 4x180K"/>
</concept>
<concept>
<code value="O7-24"/>
<display value="Agilent Human CGH 8x60K"/>
</concept>
<concept>
<code value="O7-25"/>
<display value="Agilent Human CNV 2x400K"/>
</concept>
<concept>
<code value="O7-26"/>
<display value="Agilent Human CNV Association 2x105K"/>
</concept>
<concept>
<code value="O7-27"/>
<display value="Agilent Human CpG Island Microarray Kit"/>
</concept>
<concept>
<code value="O7-28"/>
<display value="Agilent Human Genome 105A"/>
</concept>
<concept>
<code value="O7-29"/>
<display value="Agilent Human Genome 244A"/>
</concept>
<concept>
<code value="O7-30"/>
<display value="Agilent Human Genome 44K"/>
</concept>
<concept>
<code value="O7-31"/>
<display value="Agilent Human Genome CGH Custom Microaary 2x415K"/>
</concept>
<concept>
<code value="O7-32"/>
<display value="Agilent Human miRNA Microarray Kit (v2)"/>
</concept>
<concept>
<code value="O7-33"/>
<display value="Agilent Human Promoter ChIP-on-chip Microarray Set"/>
</concept>
<concept>
<code value="O7-34"/>
<display value="Agilent Human SpliceArray"/>
</concept>
<concept>
<code value="O7-35"/>
<display value="Agilent Whole Human Genome Oligo Microarray Kit"/>
</concept>
<concept>
<code value="O7-36"/>
<display value="Almac Human CRC"/>
</concept>
<concept>
<code value="O7-37"/>
<display value="capillary sequencing"/>
</concept>
<concept>
<code value="O7-38"/>
<display value="Complete Genomics"/>
</concept>
<concept>
<code value="O7-39"/>
<display value="Custom-designed cDNA array"/>
</concept>
<concept>
<code value="O7-40"/>
<display value="Custom-designed gene expression array"/>
</concept>
<concept>
<code value="O7-41"/>
<display value="Helicos sequencing"/>
</concept>
<concept>
<code value="O7-42"/>
<display value="HumanOmni2.5-8 BeadChip Kit"/>
</concept>
<concept>
<code value="O7-43"/>
<display value="Illumina GA sequencing"/>
</concept>
<concept>
<code value="O7-44"/>
<display value="Illumina goldengate methylation"/>
</concept>
<concept>
<code value="O7-45"/>
<display value="Illumina GoldenGate Methylation Cancer Panel I"/>
</concept>
<concept>
<code value="O7-46"/>
<display value="Illumina HiSeq"/>
</concept>
<concept>
<code value="O7-47"/>
<display value="Illumina HiSeq X Ten"/>
</concept>
<concept>
<code value="O7-48"/>
<display value="Illumina Human Omni1-Quad beadchip"/>
</concept>
<concept>
<code value="O7-49"/>
<display value="Illumina Human1M OmniQuad chip"/>
</concept>
<concept>
<code value="O7-50"/>
<display value="Illumina human1m-duo"/>
</concept>
<concept>
<code value="O7-51"/>
<display value="Illumina human510s-duo"/>
</concept>
<concept>
<code value="O7-52"/>
<display value="Illumina human660w-quad"/>
</concept>
<concept>
<code value="O7-53"/>
<display value="Illumina HumanCNV370-Duo v1.0 BeadChip"/>
</concept>
<concept>
<code value="O7-54"/>
<display value="Illumina humancytosnp-12"/>
</concept>
<concept>
<code value="O7-55"/>
<display value="Illumina HumanHap550"/>
</concept>
<concept>
<code value="O7-56"/>
<display value="Illumina HumanHT-12 v4.0 beadchip"/>
</concept>
<concept>
<code value="O7-57"/>
<display value="Illumina humanht-16"/>
</concept>
<concept>
<code value="O7-58"/>
<display value="Illumina humanht-17"/>
</concept>
<concept>
<code value="O7-59"/>
<display value="Illumina humanmethylation27"/>
</concept>
<concept>
<code value="O7-60"/>
<display value="Illumina HumanOmniExpress BeadChip"/>
</concept>
<concept>
<code value="O7-61"/>
<display value="Illumina HumanRef-8 v3.0 beadchip"/>
</concept>
<concept>
<code value="O7-62"/>
<display value="Illumina HumanWG-6 v3.0 beadchip"/>
</concept>
<concept>
<code value="O7-63"/>
<display value="Illumina Infinium HumanMethylation450"/>
</concept>
<concept>
<code value="O7-64"/>
<display value="Illumina microRNA Expression Profiling Panel"/>
</concept>
<concept>
<code value="O7-65"/>
<display value="Illumina MiSeq Personal Sequencer"/>
</concept>
<concept>
<code value="O7-66"/>
<display value="Ion Torrent PGM"/>
</concept>
<concept>
<code value="O7-67"/>
<display value="Ion Torrent Proton"/>
</concept>
<concept>
<code value="O7-68"/>
<display value="M.D. Anderson Reverse Phase Protein Array Core"/>
</concept>
<concept>
<code value="O7-69"/>
<display value="Microsatellite Instability Analysis"/>
</concept>
<concept>
<code value="O7-70"/>
<display value="nanoString"/>
</concept>
<concept>
<code value="O7-71"/>
<display value="Nimblegen CGS"/>
</concept>
<concept>
<code value="O7-72"/>
<display value="Nimblegen Gene Expression 12x135K"/>
</concept>
<concept>
<code value="O7-73"/>
<display value="Nimblegen Gene Expression 385K"/>
</concept>
<concept>
<code value="O7-74"/>
<display value="Nimblegen Gene Expression 4x72K"/>
</concept>
<concept>
<code value="O7-75"/>
<display value="Nimblegen Human CGH 2.1M Whole-Genome v2.0D Array"/>
</concept>
<concept>
<code value="O7-76"/>
<display value="Nimblegen Human CGH 3x720 Whole-Genome v3.0 Array"/>
</concept>
<concept>
<code value="O7-77"/>
<display value="Nimblegen Human Methylation 2.1M Whole-Genome sets"/>
</concept>
<concept>
<code value="O7-78"/>
<display value="Nimblegen Human Methylation 385K Whole-Genome sets"/>
</concept>
<concept>
<code value="O7-79"/>
<display value="PacBio RS sequencing"/>
</concept>
<concept>
<code value="O7-80"/>
<display value="PCR"/>
</concept>
<concept>
<code value="O7-81"/>
<display value="PCR and capillary sequencing"/>
</concept>
<concept>
<code value="O7-82"/>
<display value="qPCR"/>
</concept>
<concept>
<code value="O7-83"/>
<display value="Roche 454 sequencing"/>
</concept>
<concept>
<code value="O7-84"/>
<display value="Sequenom MassARRAY"/>
</concept>
<concept>
<code value="O7-85"/>
<display value="SOLiD sequencing"/>
</concept>
<concept>
<code value="O7-86"/>
<display value="Digital PCR"/>
</concept>
<concept>
<code value="O7-87"/>
<display value="NextSeq 500"/>
</concept>
<concept>
<code value="O7-88"/>
<display value="NovaSeq"/>
</concept>
<concept>
<code value="O7-OTH"/>
<display value="Other"/>
</concept>
<concept>
<code value="O10-1"/>
<display value="Ion AmpliSeq Cancer Hotspot Panel v2"/>
</concept>
<concept>
<code value="O10-2"/>
<display value="Ion AmpliSeq Colon and Lung Cancer Research Panel v2"/>
</concept>
<concept>
<code value="O10-3"/>
<display value="Ion AmpliSeq Comprehensive Cancer Panel"/>
</concept>
<concept>
<code value="O10-4"/>
<display value="Ion AmpliSeq Oncomine Comprehensive Assay"/>
</concept>
<concept>
<code value="O10-5"/>
<display value="Ion AmpliSeq Oncomine Focus Assay"/>
</concept>
<concept>
<code value="O10-6"/>
<display value="Ion AmpliSeq TP53 Research Panel"/>
</concept>
<concept>
<code value="O10-7"/>
<display value="Lyric: Ion AmpliSeq Profiler"/>
</concept>
<concept>
<code value="O10-8"/>
<display value="QIAGEN GeneRead DNAseq Targeted Panels V2"/>
</concept>
<concept>
<code value="O10-9"/>
<display value="SAFIR02 Panel"/>
</concept>
<concept>
<code value="O10-10"/>
<display value="Mosc3"/>
</concept>
<concept>
<code value="010-OTH"/>
<display value="Other"/>
</concept>
</CodeSystem>