FHIR Osiris Implementation Guide
1.1.0 - trial-implementation
FHIR Osiris Implementation Guide
1.1.0 - trial-implementation
This page is part of the OSIRIS FHIR Implementation Guide (v1.1.0: Release) based on FHIR (HL7® FHIR® Standard) R4. This is the current published version. For a full list of available versions, see the Directory of published versions
| Draft as of 2025-04-03 |
{
"resourceType" : "CodeSystem",
"id" : "OsirisCS",
"text" : {
"status" : "generated",
"div" : "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p class=\"res-header-id\"><b>Generated Narrative: CodeSystem OsirisCS</b></p><a name=\"OsirisCS\"> </a><a name=\"hcOsirisCS\"> </a><a name=\"OsirisCS-en-US\"> </a><p>This code system <code>https://terminology.arkhn.com/osiris</code> defines the following codes:</p><table class=\"codes\"><tr><td style=\"white-space:nowrap\"><b>Code</b></td><td><b>Display</b></td><td><b>Définition</b></td></tr><tr><td style=\"white-space:nowrap\">C39-1<a name=\"OsirisCS-C39-1\"> </a></td><td>CKIT</td><td>CKIT</td></tr><tr><td style=\"white-space:nowrap\">C39-2<a name=\"OsirisCS-C39-2\"> </a></td><td>b-catenine</td><td>b-catenine</td></tr><tr><td style=\"white-space:nowrap\">C39-3<a name=\"OsirisCS-C39-3\"> </a></td><td>CKIT/DOG1</td><td>CKIT/DOG1</td></tr><tr><td style=\"white-space:nowrap\">C39-4<a name=\"OsirisCS-C39-4\"> </a></td><td>FOXL2/DICER</td><td>FOXL2/DICER</td></tr><tr><td style=\"white-space:nowrap\">C39-5<a name=\"OsirisCS-C39-5\"> </a></td><td>ETV6-NTRK3</td><td>ETV6-NTRK3</td></tr><tr><td style=\"white-space:nowrap\">C39-6<a name=\"OsirisCS-C39-6\"> </a></td><td>MYB-NFIB</td><td>MYB-NFIB</td></tr><tr><td style=\"white-space:nowrap\">C39-7<a name=\"OsirisCS-C39-7\"> </a></td><td>PDGFRA/FGFR1</td><td>PDGFRA/FGFR1</td></tr><tr><td style=\"white-space:nowrap\">C39-8<a name=\"OsirisCS-C39-8\"> </a></td><td>MDM2</td><td>MDM2</td></tr><tr><td style=\"white-space:nowrap\">C39-9<a name=\"OsirisCS-C39-9\"> </a></td><td>N-MYC</td><td>N-MYC</td></tr><tr><td style=\"white-space:nowrap\">C39-10<a name=\"OsirisCS-C39-10\"> </a></td><td>C-MYC</td><td>C-MYC</td></tr><tr><td style=\"white-space:nowrap\">C39-11<a name=\"OsirisCS-C39-11\"> </a></td><td>BCR-ABL1</td><td>BCR-ABL1</td></tr><tr><td style=\"white-space:nowrap\">C39-12<a name=\"OsirisCS-C39-12\"> </a></td><td>COL1A1</td><td>COL1A1</td></tr><tr><td style=\"white-space:nowrap\">C39-13<a name=\"OsirisCS-C39-13\"> </a></td><td>DDIT3</td><td>DDIT3</td></tr><tr><td style=\"white-space:nowrap\">C39-14<a name=\"OsirisCS-C39-14\"> </a></td><td>EWSR2</td><td>EWSR2</td></tr><tr><td style=\"white-space:nowrap\">C39-15<a name=\"OsirisCS-C39-15\"> </a></td><td>SYT</td><td>SYT</td></tr><tr><td style=\"white-space:nowrap\">C39-16<a name=\"OsirisCS-C39-16\"> </a></td><td>CTNNB1</td><td>CTNNB1</td></tr><tr><td style=\"white-space:nowrap\">C39-17<a name=\"OsirisCS-C39-17\"> </a></td><td>FUS</td><td>FUS</td></tr><tr><td style=\"white-space:nowrap\">C39-18<a name=\"OsirisCS-C39-18\"> </a></td><td>IGH-BCL2</td><td>IGH-BCL2</td></tr><tr><td style=\"white-space:nowrap\">C39-19<a name=\"OsirisCS-C39-19\"> </a></td><td>JAZF1</td><td>JAZF1</td></tr><tr><td style=\"white-space:nowrap\">C39-20<a name=\"OsirisCS-C39-20\"> </a></td><td>FOXO1A</td><td>FOXO1A</td></tr><tr><td style=\"white-space:nowrap\">C39-21<a name=\"OsirisCS-C39-21\"> </a></td><td>TFE3</td><td>TFE3</td></tr><tr><td style=\"white-space:nowrap\">C39-22<a name=\"OsirisCS-C39-22\"> </a></td><td>HPV</td><td>HPV</td></tr><tr><td style=\"white-space:nowrap\">C39-23<a name=\"OsirisCS-C39-23\"> </a></td><td>Merkell</td><td>Merkell</td></tr><tr><td style=\"white-space:nowrap\">C39-24<a name=\"OsirisCS-C39-24\"> </a></td><td>EBER</td><td>EBER</td></tr><tr><td style=\"white-space:nowrap\">C39-25<a name=\"OsirisCS-C39-25\"> </a></td><td>PSA</td><td>PSA</td></tr><tr><td style=\"white-space:nowrap\">C39-26<a name=\"OsirisCS-C39-26\"> </a></td><td>CA125</td><td>CA125</td></tr><tr><td style=\"white-space:nowrap\">C39-27<a name=\"OsirisCS-C39-27\"> </a></td><td>CA153</td><td>CA153</td></tr><tr><td style=\"white-space:nowrap\">C39-28<a name=\"OsirisCS-C39-28\"> </a></td><td>CA199</td><td>CA199</td></tr><tr><td style=\"white-space:nowrap\">C39-29<a name=\"OsirisCS-C39-29\"> </a></td><td>Ki67</td><td>Ki67</td></tr><tr><td style=\"white-space:nowrap\">C39-30<a name=\"OsirisCS-C39-30\"> </a></td><td>Nb mitoses</td><td>Nb mitoses</td></tr><tr><td style=\"white-space:nowrap\">C39-31<a name=\"OsirisCS-C39-31\"> </a></td><td>RO</td><td>RO</td></tr><tr><td style=\"white-space:nowrap\">C39-32<a name=\"OsirisCS-C39-32\"> </a></td><td>RP</td><td>RP</td></tr><tr><td style=\"white-space:nowrap\">C39-33<a name=\"OsirisCS-C39-33\"> </a></td><td>HER2</td><td>HER2</td></tr><tr><td style=\"white-space:nowrap\">C39-34<a name=\"OsirisCS-C39-34\"> </a></td><td>PD-L1</td><td>PD-L1</td></tr><tr><td style=\"white-space:nowrap\">C39-35<a name=\"OsirisCS-C39-35\"> </a></td><td>AMHR2</td><td>AMHR2</td></tr><tr><td style=\"white-space:nowrap\">C39-36<a name=\"OsirisCS-C39-36\"> </a></td><td>P53</td><td>P53</td></tr><tr><td style=\"white-space:nowrap\">C39-37<a name=\"OsirisCS-C39-37\"> </a></td><td>BRCA</td><td>BRCA</td></tr><tr><td style=\"white-space:nowrap\">C39-38<a name=\"OsirisCS-C39-38\"> </a></td><td>MSI</td><td>MSI</td></tr><tr><td style=\"white-space:nowrap\">C39-39<a name=\"OsirisCS-C39-39\"> </a></td><td>CDK12</td><td>CDK12</td></tr><tr><td style=\"white-space:nowrap\">C39-40<a name=\"OsirisCS-C39-40\"> </a></td><td>BRAF</td><td>BRAF</td></tr><tr><td style=\"white-space:nowrap\">C39-41<a name=\"OsirisCS-C39-41\"> </a></td><td>NRAS-KRAS</td><td>NRAS-KRAS</td></tr><tr><td style=\"white-space:nowrap\">C39-42<a name=\"OsirisCS-C39-42\"> </a></td><td>EGFR</td><td>EGFR</td></tr><tr><td style=\"white-space:nowrap\">C39-43<a name=\"OsirisCS-C39-43\"> </a></td><td>ALK</td><td>ALK</td></tr><tr><td style=\"white-space:nowrap\">C39-44<a name=\"OsirisCS-C39-44\"> </a></td><td>ROS1</td><td>ROS1</td></tr><tr><td style=\"white-space:nowrap\">C39-45<a name=\"OsirisCS-C39-45\"> </a></td><td>C-MET</td><td>C-MET</td></tr><tr><td style=\"white-space:nowrap\">C39-46<a name=\"OsirisCS-C39-46\"> </a></td><td>ESR1</td><td>ESR1</td></tr><tr><td style=\"white-space:nowrap\">C39-47<a name=\"OsirisCS-C39-47\"> </a></td><td>PAM50</td><td>PAM50</td></tr><tr><td style=\"white-space:nowrap\">C39-48<a name=\"OsirisCS-C39-48\"> </a></td><td>ENDOPREDICT</td><td>ENDOPREDICT</td></tr><tr><td style=\"white-space:nowrap\">C37-1<a name=\"OsirisCS-C37-1\"> </a></td><td>Biology</td><td>Biology</td></tr><tr><td style=\"white-space:nowrap\">C37-2<a name=\"OsirisCS-C37-2\"> </a></td><td>Imaging</td><td>Imaging</td></tr><tr><td style=\"white-space:nowrap\">C37-3<a name=\"OsirisCS-C37-3\"> </a></td><td>Omic</td><td>Omic</td></tr><tr><td style=\"white-space:nowrap\">C37-4<a name=\"OsirisCS-C37-4\"> </a></td><td>Pathology</td><td>Pathology</td></tr><tr><td style=\"white-space:nowrap\">C27-1<a name=\"OsirisCS-C27-1\"> </a></td><td>5th edition</td><td>UICC TNM Classification 5th edition</td></tr><tr><td style=\"white-space:nowrap\">C27-2<a name=\"OsirisCS-C27-2\"> </a></td><td>6th edition</td><td>UICC TNM Classification 6th edition</td></tr><tr><td style=\"white-space:nowrap\">C27-3<a name=\"OsirisCS-C27-3\"> </a></td><td>7th edition</td><td>UICC TNM Classification 7th edition</td></tr><tr><td style=\"white-space:nowrap\">O59-1<a name=\"OsirisCS-O59-1\"> </a></td><td>Normal</td><td>Normal sample</td></tr><tr><td style=\"white-space:nowrap\">O59-2<a name=\"OsirisCS-O59-2\"> </a></td><td>Tumoral</td><td>Tumoral sample</td></tr><tr><td style=\"white-space:nowrap\">C60-1<a name=\"OsirisCS-C60-1\"> </a></td><td>Room temperature</td><td>Room temperature</td></tr><tr><td style=\"white-space:nowrap\">C60-2<a name=\"OsirisCS-C60-2\"> </a></td><td>Between 2 °C and 10 °C</td><td>Between 2 °C and 10 °C</td></tr><tr><td style=\"white-space:nowrap\">C60-3<a name=\"OsirisCS-C60-3\"> </a></td><td>Between -18 °C and -35 °C</td><td>Between -18 °C and -35 °C</td></tr><tr><td style=\"white-space:nowrap\">C60-4<a name=\"OsirisCS-C60-4\"> </a></td><td>Between -60 °C and -85 °C</td><td>Between -60 °C and -85 °C</td></tr><tr><td style=\"white-space:nowrap\">C60-5<a name=\"OsirisCS-C60-5\"> </a></td><td>Liquid nitrogen, -150 °C to -196 °C</td><td>Liquid nitrogen, -150 °C to -196 °C</td></tr><tr><td style=\"white-space:nowrap\">O6-1<a name=\"OsirisCS-O6-1\"> </a></td><td>ChIP-on-Chip</td><td>ChIP-on-Chip</td></tr><tr><td style=\"white-space:nowrap\">O6-2<a name=\"OsirisCS-O6-2\"> </a></td><td>ChIP-seq</td><td>ChIP-seq</td></tr><tr><td style=\"white-space:nowrap\">O6-3<a name=\"OsirisCS-O6-3\"> </a></td><td>DNA microarray</td><td>DNA microarray</td></tr><tr><td style=\"white-space:nowrap\">O6-4<a name=\"OsirisCS-O6-4\"> </a></td><td>DNA targeted panel sequencing</td><td>DNA targeted panel sequencing</td></tr><tr><td style=\"white-space:nowrap\">O6-5<a name=\"OsirisCS-O6-5\"> </a></td><td>Exome sequencing</td><td>Exome sequencing</td></tr><tr><td style=\"white-space:nowrap\">O6-6<a name=\"OsirisCS-O6-6\"> </a></td><td>Mass spectrometry</td><td>Mass spectrometry</td></tr><tr><td style=\"white-space:nowrap\">O6-7<a name=\"OsirisCS-O6-7\"> </a></td><td>MeDIP-Chip</td><td>MeDIP-Chip</td></tr><tr><td style=\"white-space:nowrap\">O6-8<a name=\"OsirisCS-O6-8\"> </a></td><td>MeDIP-seq</td><td>MeDIP-seq</td></tr><tr><td style=\"white-space:nowrap\">O6-9<a name=\"OsirisCS-O6-9\"> </a></td><td>Methylation microarray</td><td>Methylation microarray</td></tr><tr><td style=\"white-space:nowrap\">O6-10<a name=\"OsirisCS-O6-10\"> </a></td><td>RNA microarray</td><td>RNA microarray</td></tr><tr><td style=\"white-space:nowrap\">O6-11<a name=\"OsirisCS-O6-11\"> </a></td><td>RNA targeted panel sequencing</td><td>RNA targeted panel sequencing</td></tr><tr><td style=\"white-space:nowrap\">O6-12<a name=\"OsirisCS-O6-12\"> </a></td><td>RNA-seq</td><td>RNA-seq</td></tr><tr><td style=\"white-space:nowrap\">O6-13<a name=\"OsirisCS-O6-13\"> </a></td><td>RPPA</td><td>RPPA</td></tr><tr><td style=\"white-space:nowrap\">O6-14<a name=\"OsirisCS-O6-14\"> </a></td><td>Whole genome bisulfite sequencing</td><td>Whole genome bisulfite sequencing</td></tr><tr><td style=\"white-space:nowrap\">O6-15<a name=\"OsirisCS-O6-15\"> </a></td><td>Whole genome sequencing</td><td>Whole genome sequencing</td></tr><tr><td style=\"white-space:nowrap\">O6-16<a name=\"OsirisCS-O6-16\"> </a></td><td>miRNA microarray</td><td>miRNA microarray</td></tr><tr><td style=\"white-space:nowrap\">O90-1<a name=\"OsirisCS-O90-1\"> </a></td><td>Fusion transcript</td><td>Fusion transcript</td></tr><tr><td style=\"white-space:nowrap\">O90-3<a name=\"OsirisCS-O90-3\"> </a></td><td>Population frequency</td><td>Population frequency</td></tr><tr><td style=\"white-space:nowrap\">O90-4<a name=\"OsirisCS-O90-4\"> </a></td><td>Protein reference</td><td>Protein reference</td></tr><tr><td style=\"white-space:nowrap\">O90-5<a name=\"OsirisCS-O90-5\"> </a></td><td>Transcript reference</td><td>Transcript reference</td></tr><tr><td style=\"white-space:nowrap\">O90-6<a name=\"OsirisCS-O90-6\"> </a></td><td>Variant id</td><td>Variant id</td></tr><tr><td style=\"white-space:nowrap\">O19-1<a name=\"OsirisCS-O19-1\"> </a></td><td>MT</td><td>Mitochondrial genetic material</td></tr><tr><td style=\"white-space:nowrap\">O19-2<a name=\"OsirisCS-O19-2\"> </a></td><td>viral</td><td>Viral genetic material</td></tr><tr><td style=\"white-space:nowrap\">O19-3<a name=\"OsirisCS-O19-3\"> </a></td><td>bacterial</td><td>Bacterial genetic material</td></tr><tr><td style=\"white-space:nowrap\">O63-1<a name=\"OsirisCS-O63-1\"> </a></td><td>SIFT</td><td>SIFT</td></tr><tr><td style=\"white-space:nowrap\">O63-2<a name=\"OsirisCS-O63-2\"> </a></td><td>POLYPHEN2_HDIV</td><td>POLYPHEN2_HDIV</td></tr><tr><td style=\"white-space:nowrap\">O63-3<a name=\"OsirisCS-O63-3\"> </a></td><td>MutationTaster</td><td>MutationTaster</td></tr><tr><td style=\"white-space:nowrap\">O81-1<a name=\"OsirisCS-O81-1\"> </a></td><td>Pathogenic</td><td>Pathogenic</td></tr><tr><td style=\"white-space:nowrap\">O81-2<a name=\"OsirisCS-O81-2\"> </a></td><td>Likely pathogenic</td><td>Likely pathogenic</td></tr><tr><td style=\"white-space:nowrap\">O81-3<a name=\"OsirisCS-O81-3\"> </a></td><td>Uncertain significance</td><td>Uncertain significance</td></tr><tr><td style=\"white-space:nowrap\">O81-4<a name=\"OsirisCS-O81-4\"> </a></td><td>Likely benign</td><td>Likely benign</td></tr><tr><td style=\"white-space:nowrap\">O81-5<a name=\"OsirisCS-O81-5\"> </a></td><td>Benign</td><td>Benign</td></tr><tr><td style=\"white-space:nowrap\">O16-1<a name=\"OsirisCS-O16-1\"> </a></td><td>Experimental</td><td>Experimental</td></tr><tr><td style=\"white-space:nowrap\">O16-2<a name=\"OsirisCS-O16-2\"> </a></td><td>By biologist</td><td>By biologist</td></tr><tr><td style=\"white-space:nowrap\">O16-3<a name=\"OsirisCS-O16-3\"> </a></td><td>In silico</td><td>In silico</td></tr><tr><td style=\"white-space:nowrap\">O84-1<a name=\"OsirisCS-O84-1\"> </a></td><td>RawExpression</td><td>RawExpression</td></tr><tr><td style=\"white-space:nowrap\">O84-2<a name=\"OsirisCS-O84-2\"> </a></td><td>NormalizedExpression</td><td>NormalizedExpression</td></tr><tr><td style=\"white-space:nowrap\">O84-3<a name=\"OsirisCS-O84-3\"> </a></td><td>TPMExpression</td><td>TPMExpression</td></tr><tr><td style=\"white-space:nowrap\">O84-4<a name=\"OsirisCS-O84-4\"> </a></td><td>RPKMExpression</td><td>RPKMExpression</td></tr><tr><td style=\"white-space:nowrap\">O28-1<a name=\"OsirisCS-O28-1\"> </a></td><td>readthrough</td><td>readthrough</td></tr><tr><td style=\"white-space:nowrap\">C60-6<a name=\"OsirisCS-C60-6\"> </a></td><td>Other</td><td>Other</td></tr><tr><td style=\"white-space:nowrap\">C77-6<a name=\"OsirisCS-C77-6\"> </a></td><td>Other</td><td>Other</td></tr><tr><td style=\"white-space:nowrap\">O6-OTH<a name=\"OsirisCS-O6-OTH\"> </a></td><td>Other</td><td>Other</td></tr><tr><td style=\"white-space:nowrap\">O13-OTH<a name=\"OsirisCS-O13-OTH\"> </a></td><td>Other</td><td>Other</td></tr><tr><td style=\"white-space:nowrap\">O7-1<a name=\"OsirisCS-O7-1\"> </a></td><td>Affymetrix Cytoscan HD</td><td/></tr><tr><td style=\"white-space:nowrap\">O7-2<a name=\"OsirisCS-O7-2\"> </a></td><td>Affymetrix EMET Plus Premier Pack</td><td/></tr><tr><td style=\"white-space:nowrap\">O7-3<a name=\"OsirisCS-O7-3\"> </a></td><td>Affymetrix Genome-Wide Human SNP Array 5.0</td><td/></tr><tr><td style=\"white-space:nowrap\">O7-4<a name=\"OsirisCS-O7-4\"> </a></td><td>Affymetrix Genome-Wide Human SNP Array 6.0</td><td/></tr><tr><td style=\"white-space:nowrap\">O7-5<a name=\"OsirisCS-O7-5\"> </a></td><td>Affymetrix HT Human Genome U133A Array Plate Set</td><td/></tr><tr><td style=\"white-space:nowrap\">O7-6<a name=\"OsirisCS-O7-6\"> </a></td><td>Affymetrix Human Exon 1.0 ST</td><td/></tr><tr><td style=\"white-space:nowrap\">O7-7<a name=\"OsirisCS-O7-7\"> </a></td><td>Affymetrix Human Gene 1.0 ST</td><td/></tr><tr><td style=\"white-space:nowrap\">O7-8<a name=\"OsirisCS-O7-8\"> </a></td><td>Affymetrix Human Genome U219 Array Plate</td><td/></tr><tr><td style=\"white-space:nowrap\">O7-9<a name=\"OsirisCS-O7-9\"> </a></td><td>Affymetrix Human MIP 330K</td><td/></tr><tr><td style=\"white-space:nowrap\">O7-10<a name=\"OsirisCS-O7-10\"> </a></td><td>Affymetrix Human U133 Plus 2.0</td><td/></tr><tr><td style=\"white-space:nowrap\">O7-11<a name=\"OsirisCS-O7-11\"> </a></td><td>Affymetrix Human U133 Plus PM</td><td/></tr><tr><td style=\"white-space:nowrap\">O7-12<a name=\"OsirisCS-O7-12\"> </a></td><td>Affymetrix Mapping 100K Array Set</td><td/></tr><tr><td style=\"white-space:nowrap\">O7-13<a name=\"OsirisCS-O7-13\"> </a></td><td>Affymetrix Mapping 10K 2.0 Array Set</td><td/></tr><tr><td style=\"white-space:nowrap\">O7-14<a name=\"OsirisCS-O7-14\"> </a></td><td>Affymetrix Mapping 500K Array Set</td><td/></tr><tr><td style=\"white-space:nowrap\">O7-15<a name=\"OsirisCS-O7-15\"> </a></td><td>Affymetrix OncoScan FFPE Express 2.0</td><td/></tr><tr><td style=\"white-space:nowrap\">O7-16<a name=\"OsirisCS-O7-16\"> </a></td><td>Agilent 244K Custom Gene Expression G4502A-07</td><td/></tr><tr><td style=\"white-space:nowrap\">O7-17<a name=\"OsirisCS-O7-17\"> </a></td><td>Agilent 244K Custom Gene Expression G4502A-07-1</td><td/></tr><tr><td style=\"white-space:nowrap\">O7-18<a name=\"OsirisCS-O7-18\"> </a></td><td>Agilent 244K Custom Gene Expression G4502A-07-2</td><td/></tr><tr><td style=\"white-space:nowrap\">O7-19<a name=\"OsirisCS-O7-19\"> </a></td><td>Agilent 244K Custom Gene Expression G4502A-07-3</td><td/></tr><tr><td style=\"white-space:nowrap\">O7-20<a name=\"OsirisCS-O7-20\"> </a></td><td>Agilent 8 x 15K Human miRNA-specific microarray</td><td/></tr><tr><td style=\"white-space:nowrap\">O7-21<a name=\"OsirisCS-O7-21\"> </a></td><td>Agilent Human CGH 1x1M</td><td/></tr><tr><td style=\"white-space:nowrap\">O7-22<a name=\"OsirisCS-O7-22\"> </a></td><td>Agilent Human CGH 2x400K</td><td/></tr><tr><td style=\"white-space:nowrap\">O7-23<a name=\"OsirisCS-O7-23\"> </a></td><td>Agilent Human CGH 4x180K</td><td/></tr><tr><td style=\"white-space:nowrap\">O7-24<a name=\"OsirisCS-O7-24\"> </a></td><td>Agilent Human CGH 8x60K</td><td/></tr><tr><td style=\"white-space:nowrap\">O7-25<a name=\"OsirisCS-O7-25\"> </a></td><td>Agilent Human CNV 2x400K</td><td/></tr><tr><td style=\"white-space:nowrap\">O7-26<a name=\"OsirisCS-O7-26\"> </a></td><td>Agilent Human CNV Association 2x105K</td><td/></tr><tr><td style=\"white-space:nowrap\">O7-27<a name=\"OsirisCS-O7-27\"> </a></td><td>Agilent Human CpG Island Microarray Kit</td><td/></tr><tr><td style=\"white-space:nowrap\">O7-28<a name=\"OsirisCS-O7-28\"> </a></td><td>Agilent Human Genome 105A</td><td/></tr><tr><td style=\"white-space:nowrap\">O7-29<a name=\"OsirisCS-O7-29\"> </a></td><td>Agilent Human Genome 244A</td><td/></tr><tr><td style=\"white-space:nowrap\">O7-30<a name=\"OsirisCS-O7-30\"> </a></td><td>Agilent Human Genome 44K</td><td/></tr><tr><td style=\"white-space:nowrap\">O7-31<a name=\"OsirisCS-O7-31\"> </a></td><td>Agilent Human Genome CGH Custom Microaary 2x415K</td><td/></tr><tr><td style=\"white-space:nowrap\">O7-32<a name=\"OsirisCS-O7-32\"> </a></td><td>Agilent Human miRNA Microarray Kit (v2)</td><td/></tr><tr><td style=\"white-space:nowrap\">O7-33<a name=\"OsirisCS-O7-33\"> </a></td><td>Agilent Human Promoter ChIP-on-chip Microarray Set</td><td/></tr><tr><td style=\"white-space:nowrap\">O7-34<a name=\"OsirisCS-O7-34\"> </a></td><td>Agilent Human SpliceArray</td><td/></tr><tr><td style=\"white-space:nowrap\">O7-35<a name=\"OsirisCS-O7-35\"> </a></td><td>Agilent Whole Human Genome Oligo Microarray Kit</td><td/></tr><tr><td style=\"white-space:nowrap\">O7-36<a name=\"OsirisCS-O7-36\"> </a></td><td>Almac Human CRC</td><td/></tr><tr><td style=\"white-space:nowrap\">O7-37<a name=\"OsirisCS-O7-37\"> </a></td><td>capillary sequencing</td><td/></tr><tr><td style=\"white-space:nowrap\">O7-38<a name=\"OsirisCS-O7-38\"> </a></td><td>Complete Genomics</td><td/></tr><tr><td style=\"white-space:nowrap\">O7-39<a name=\"OsirisCS-O7-39\"> </a></td><td>Custom-designed cDNA array</td><td/></tr><tr><td style=\"white-space:nowrap\">O7-40<a name=\"OsirisCS-O7-40\"> </a></td><td>Custom-designed gene expression array</td><td/></tr><tr><td style=\"white-space:nowrap\">O7-41<a name=\"OsirisCS-O7-41\"> </a></td><td>Helicos sequencing</td><td/></tr><tr><td style=\"white-space:nowrap\">O7-42<a name=\"OsirisCS-O7-42\"> </a></td><td>HumanOmni2.5-8 BeadChip Kit</td><td/></tr><tr><td style=\"white-space:nowrap\">O7-43<a name=\"OsirisCS-O7-43\"> </a></td><td>Illumina GA sequencing</td><td/></tr><tr><td style=\"white-space:nowrap\">O7-44<a name=\"OsirisCS-O7-44\"> </a></td><td>Illumina goldengate methylation</td><td/></tr><tr><td style=\"white-space:nowrap\">O7-45<a name=\"OsirisCS-O7-45\"> </a></td><td>Illumina GoldenGate Methylation Cancer Panel I</td><td/></tr><tr><td style=\"white-space:nowrap\">O7-46<a name=\"OsirisCS-O7-46\"> </a></td><td>Illumina HiSeq</td><td/></tr><tr><td style=\"white-space:nowrap\">O7-47<a name=\"OsirisCS-O7-47\"> </a></td><td>Illumina HiSeq X Ten</td><td/></tr><tr><td style=\"white-space:nowrap\">O7-48<a name=\"OsirisCS-O7-48\"> </a></td><td>Illumina Human Omni1-Quad beadchip</td><td/></tr><tr><td style=\"white-space:nowrap\">O7-49<a name=\"OsirisCS-O7-49\"> </a></td><td>Illumina Human1M OmniQuad chip</td><td/></tr><tr><td style=\"white-space:nowrap\">O7-50<a name=\"OsirisCS-O7-50\"> </a></td><td>Illumina human1m-duo</td><td/></tr><tr><td style=\"white-space:nowrap\">O7-51<a name=\"OsirisCS-O7-51\"> </a></td><td>Illumina human510s-duo</td><td/></tr><tr><td style=\"white-space:nowrap\">O7-52<a name=\"OsirisCS-O7-52\"> </a></td><td>Illumina human660w-quad</td><td/></tr><tr><td style=\"white-space:nowrap\">O7-53<a name=\"OsirisCS-O7-53\"> </a></td><td>Illumina HumanCNV370-Duo v1.0 BeadChip</td><td/></tr><tr><td style=\"white-space:nowrap\">O7-54<a name=\"OsirisCS-O7-54\"> </a></td><td>Illumina humancytosnp-12</td><td/></tr><tr><td style=\"white-space:nowrap\">O7-55<a name=\"OsirisCS-O7-55\"> </a></td><td>Illumina HumanHap550</td><td/></tr><tr><td style=\"white-space:nowrap\">O7-56<a name=\"OsirisCS-O7-56\"> </a></td><td>Illumina HumanHT-12 v4.0 beadchip</td><td/></tr><tr><td style=\"white-space:nowrap\">O7-57<a name=\"OsirisCS-O7-57\"> </a></td><td>Illumina humanht-16</td><td/></tr><tr><td style=\"white-space:nowrap\">O7-58<a name=\"OsirisCS-O7-58\"> </a></td><td>Illumina humanht-17</td><td/></tr><tr><td style=\"white-space:nowrap\">O7-59<a name=\"OsirisCS-O7-59\"> </a></td><td>Illumina humanmethylation27</td><td/></tr><tr><td style=\"white-space:nowrap\">O7-60<a name=\"OsirisCS-O7-60\"> </a></td><td>Illumina HumanOmniExpress BeadChip</td><td/></tr><tr><td style=\"white-space:nowrap\">O7-61<a name=\"OsirisCS-O7-61\"> </a></td><td>Illumina HumanRef-8 v3.0 beadchip</td><td/></tr><tr><td style=\"white-space:nowrap\">O7-62<a name=\"OsirisCS-O7-62\"> </a></td><td>Illumina HumanWG-6 v3.0 beadchip</td><td/></tr><tr><td style=\"white-space:nowrap\">O7-63<a name=\"OsirisCS-O7-63\"> </a></td><td>Illumina Infinium HumanMethylation450</td><td/></tr><tr><td style=\"white-space:nowrap\">O7-64<a name=\"OsirisCS-O7-64\"> </a></td><td>Illumina microRNA Expression Profiling Panel</td><td/></tr><tr><td style=\"white-space:nowrap\">O7-65<a name=\"OsirisCS-O7-65\"> </a></td><td>Illumina MiSeq Personal Sequencer</td><td/></tr><tr><td style=\"white-space:nowrap\">O7-66<a name=\"OsirisCS-O7-66\"> </a></td><td>Ion Torrent PGM</td><td/></tr><tr><td style=\"white-space:nowrap\">O7-67<a name=\"OsirisCS-O7-67\"> </a></td><td>Ion Torrent Proton</td><td/></tr><tr><td style=\"white-space:nowrap\">O7-68<a name=\"OsirisCS-O7-68\"> </a></td><td>M.D. Anderson Reverse Phase Protein Array Core</td><td/></tr><tr><td style=\"white-space:nowrap\">O7-69<a name=\"OsirisCS-O7-69\"> </a></td><td>Microsatellite Instability Analysis</td><td/></tr><tr><td style=\"white-space:nowrap\">O7-70<a name=\"OsirisCS-O7-70\"> </a></td><td>nanoString</td><td/></tr><tr><td style=\"white-space:nowrap\">O7-71<a name=\"OsirisCS-O7-71\"> </a></td><td>Nimblegen CGS</td><td/></tr><tr><td style=\"white-space:nowrap\">O7-72<a name=\"OsirisCS-O7-72\"> </a></td><td>Nimblegen Gene Expression 12x135K</td><td/></tr><tr><td style=\"white-space:nowrap\">O7-73<a name=\"OsirisCS-O7-73\"> </a></td><td>Nimblegen Gene Expression 385K</td><td/></tr><tr><td style=\"white-space:nowrap\">O7-74<a name=\"OsirisCS-O7-74\"> </a></td><td>Nimblegen Gene Expression 4x72K</td><td/></tr><tr><td style=\"white-space:nowrap\">O7-75<a name=\"OsirisCS-O7-75\"> </a></td><td>Nimblegen Human CGH 2.1M Whole-Genome v2.0D Array</td><td/></tr><tr><td style=\"white-space:nowrap\">O7-76<a name=\"OsirisCS-O7-76\"> </a></td><td>Nimblegen Human CGH 3x720 Whole-Genome v3.0 Array</td><td/></tr><tr><td style=\"white-space:nowrap\">O7-77<a name=\"OsirisCS-O7-77\"> </a></td><td>Nimblegen Human Methylation 2.1M Whole-Genome sets</td><td/></tr><tr><td style=\"white-space:nowrap\">O7-78<a name=\"OsirisCS-O7-78\"> </a></td><td>Nimblegen Human Methylation 385K Whole-Genome sets</td><td/></tr><tr><td style=\"white-space:nowrap\">O7-79<a name=\"OsirisCS-O7-79\"> </a></td><td>PacBio RS sequencing</td><td/></tr><tr><td style=\"white-space:nowrap\">O7-80<a name=\"OsirisCS-O7-80\"> </a></td><td>PCR</td><td/></tr><tr><td style=\"white-space:nowrap\">O7-81<a name=\"OsirisCS-O7-81\"> </a></td><td>PCR and capillary sequencing</td><td/></tr><tr><td style=\"white-space:nowrap\">O7-82<a name=\"OsirisCS-O7-82\"> </a></td><td>qPCR</td><td/></tr><tr><td style=\"white-space:nowrap\">O7-83<a name=\"OsirisCS-O7-83\"> </a></td><td>Roche 454 sequencing</td><td/></tr><tr><td style=\"white-space:nowrap\">O7-84<a name=\"OsirisCS-O7-84\"> </a></td><td>Sequenom MassARRAY</td><td/></tr><tr><td style=\"white-space:nowrap\">O7-85<a name=\"OsirisCS-O7-85\"> </a></td><td>SOLiD sequencing</td><td/></tr><tr><td style=\"white-space:nowrap\">O7-86<a name=\"OsirisCS-O7-86\"> </a></td><td>Digital PCR</td><td/></tr><tr><td style=\"white-space:nowrap\">O7-87<a name=\"OsirisCS-O7-87\"> </a></td><td>NextSeq 500</td><td/></tr><tr><td style=\"white-space:nowrap\">O7-88<a name=\"OsirisCS-O7-88\"> </a></td><td>NovaSeq</td><td/></tr><tr><td style=\"white-space:nowrap\">O7-OTH<a name=\"OsirisCS-O7-OTH\"> </a></td><td>Other</td><td/></tr><tr><td style=\"white-space:nowrap\">O10-1<a name=\"OsirisCS-O10-1\"> </a></td><td>Ion AmpliSeq Cancer Hotspot Panel v2</td><td/></tr><tr><td style=\"white-space:nowrap\">O10-2<a name=\"OsirisCS-O10-2\"> </a></td><td>Ion AmpliSeq Colon and Lung Cancer Research Panel v2</td><td/></tr><tr><td style=\"white-space:nowrap\">O10-3<a name=\"OsirisCS-O10-3\"> </a></td><td>Ion AmpliSeq Comprehensive Cancer Panel</td><td/></tr><tr><td style=\"white-space:nowrap\">O10-4<a name=\"OsirisCS-O10-4\"> </a></td><td>Ion AmpliSeq Oncomine Comprehensive Assay</td><td/></tr><tr><td style=\"white-space:nowrap\">O10-5<a name=\"OsirisCS-O10-5\"> </a></td><td>Ion AmpliSeq Oncomine Focus Assay</td><td/></tr><tr><td style=\"white-space:nowrap\">O10-6<a name=\"OsirisCS-O10-6\"> </a></td><td>Ion AmpliSeq TP53 Research Panel</td><td/></tr><tr><td style=\"white-space:nowrap\">O10-7<a name=\"OsirisCS-O10-7\"> </a></td><td>Lyric: Ion AmpliSeq Profiler</td><td/></tr><tr><td style=\"white-space:nowrap\">O10-8<a name=\"OsirisCS-O10-8\"> </a></td><td>QIAGEN GeneRead DNAseq Targeted Panels V2</td><td/></tr><tr><td style=\"white-space:nowrap\">O10-9<a name=\"OsirisCS-O10-9\"> </a></td><td>SAFIR02 Panel</td><td/></tr><tr><td style=\"white-space:nowrap\">O10-10<a name=\"OsirisCS-O10-10\"> </a></td><td>Mosc3</td><td/></tr><tr><td style=\"white-space:nowrap\">010-OTH<a name=\"OsirisCS-010-OTH\"> </a></td><td>Other</td><td/></tr></table></div>"
},
"url" : "https://terminology.arkhn.com/osiris",
"version" : "1.1.0",
"name" : "OsirisCS",
"title" : "Osiris code system",
"status" : "draft",
"date" : "2025-04-03T15:16:31+02:00",
"publisher" : "institutcancer",
"contact" : [
{
"name" : "institutcancer",
"telecom" : [
{
"system" : "url",
"value" : "http://cancer.fr"
},
{
"system" : "email",
"value" : "osiris@institutcancer.fr"
}
]
},
{
"name" : "Aurélien JOBARD",
"telecom" : [
{
"system" : "email",
"value" : "osiris@institutcancer.fr"
}
]
}
],
"description" : "Custom code from osiris standard",
"content" : "complete",
"count" : 206,
"concept" : [
{
"code" : "C39-1",
"display" : "CKIT",
"definition" : "CKIT"
},
{
"code" : "C39-2",
"display" : "b-catenine",
"definition" : "b-catenine"
},
{
"code" : "C39-3",
"display" : "CKIT/DOG1",
"definition" : "CKIT/DOG1"
},
{
"code" : "C39-4",
"display" : "FOXL2/DICER",
"definition" : "FOXL2/DICER"
},
{
"code" : "C39-5",
"display" : "ETV6-NTRK3",
"definition" : "ETV6-NTRK3"
},
{
"code" : "C39-6",
"display" : "MYB-NFIB",
"definition" : "MYB-NFIB"
},
{
"code" : "C39-7",
"display" : "PDGFRA/FGFR1",
"definition" : "PDGFRA/FGFR1"
},
{
"code" : "C39-8",
"display" : "MDM2",
"definition" : "MDM2"
},
{
"code" : "C39-9",
"display" : "N-MYC",
"definition" : "N-MYC"
},
{
"code" : "C39-10",
"display" : "C-MYC",
"definition" : "C-MYC"
},
{
"code" : "C39-11",
"display" : "BCR-ABL1",
"definition" : "BCR-ABL1"
},
{
"code" : "C39-12",
"display" : "COL1A1",
"definition" : "COL1A1"
},
{
"code" : "C39-13",
"display" : "DDIT3",
"definition" : "DDIT3"
},
{
"code" : "C39-14",
"display" : "EWSR2",
"definition" : "EWSR2"
},
{
"code" : "C39-15",
"display" : "SYT",
"definition" : "SYT"
},
{
"code" : "C39-16",
"display" : "CTNNB1",
"definition" : "CTNNB1"
},
{
"code" : "C39-17",
"display" : "FUS",
"definition" : "FUS"
},
{
"code" : "C39-18",
"display" : "IGH-BCL2",
"definition" : "IGH-BCL2"
},
{
"code" : "C39-19",
"display" : "JAZF1",
"definition" : "JAZF1"
},
{
"code" : "C39-20",
"display" : "FOXO1A",
"definition" : "FOXO1A"
},
{
"code" : "C39-21",
"display" : "TFE3",
"definition" : "TFE3"
},
{
"code" : "C39-22",
"display" : "HPV",
"definition" : "HPV"
},
{
"code" : "C39-23",
"display" : "Merkell",
"definition" : "Merkell"
},
{
"code" : "C39-24",
"display" : "EBER",
"definition" : "EBER"
},
{
"code" : "C39-25",
"display" : "PSA",
"definition" : "PSA"
},
{
"code" : "C39-26",
"display" : "CA125",
"definition" : "CA125"
},
{
"code" : "C39-27",
"display" : "CA153",
"definition" : "CA153"
},
{
"code" : "C39-28",
"display" : "CA199",
"definition" : "CA199"
},
{
"code" : "C39-29",
"display" : "Ki67",
"definition" : "Ki67"
},
{
"code" : "C39-30",
"display" : "Nb mitoses",
"definition" : "Nb mitoses"
},
{
"code" : "C39-31",
"display" : "RO",
"definition" : "RO"
},
{
"code" : "C39-32",
"display" : "RP",
"definition" : "RP"
},
{
"code" : "C39-33",
"display" : "HER2",
"definition" : "HER2"
},
{
"code" : "C39-34",
"display" : "PD-L1",
"definition" : "PD-L1"
},
{
"code" : "C39-35",
"display" : "AMHR2",
"definition" : "AMHR2"
},
{
"code" : "C39-36",
"display" : "P53",
"definition" : "P53"
},
{
"code" : "C39-37",
"display" : "BRCA",
"definition" : "BRCA"
},
{
"code" : "C39-38",
"display" : "MSI",
"definition" : "MSI"
},
{
"code" : "C39-39",
"display" : "CDK12",
"definition" : "CDK12"
},
{
"code" : "C39-40",
"display" : "BRAF",
"definition" : "BRAF"
},
{
"code" : "C39-41",
"display" : "NRAS-KRAS",
"definition" : "NRAS-KRAS"
},
{
"code" : "C39-42",
"display" : "EGFR",
"definition" : "EGFR"
},
{
"code" : "C39-43",
"display" : "ALK",
"definition" : "ALK"
},
{
"code" : "C39-44",
"display" : "ROS1",
"definition" : "ROS1"
},
{
"code" : "C39-45",
"display" : "C-MET",
"definition" : "C-MET"
},
{
"code" : "C39-46",
"display" : "ESR1",
"definition" : "ESR1"
},
{
"code" : "C39-47",
"display" : "PAM50",
"definition" : "PAM50"
},
{
"code" : "C39-48",
"display" : "ENDOPREDICT",
"definition" : "ENDOPREDICT"
},
{
"code" : "C37-1",
"display" : "Biology",
"definition" : "Biology"
},
{
"code" : "C37-2",
"display" : "Imaging",
"definition" : "Imaging"
},
{
"code" : "C37-3",
"display" : "Omic",
"definition" : "Omic"
},
{
"code" : "C37-4",
"display" : "Pathology",
"definition" : "Pathology"
},
{
"code" : "C27-1",
"display" : "5th edition",
"definition" : "UICC TNM Classification 5th edition"
},
{
"code" : "C27-2",
"display" : "6th edition",
"definition" : "UICC TNM Classification 6th edition"
},
{
"code" : "C27-3",
"display" : "7th edition",
"definition" : "UICC TNM Classification 7th edition"
},
{
"code" : "O59-1",
"display" : "Normal",
"definition" : "Normal sample"
},
{
"code" : "O59-2",
"display" : "Tumoral",
"definition" : "Tumoral sample"
},
{
"code" : "C60-1",
"display" : "Room temperature",
"definition" : "Room temperature"
},
{
"code" : "C60-2",
"display" : "Between 2 °C and 10 °C",
"definition" : "Between 2 °C and 10 °C"
},
{
"code" : "C60-3",
"display" : "Between -18 °C and -35 °C",
"definition" : "Between -18 °C and -35 °C"
},
{
"code" : "C60-4",
"display" : "Between -60 °C and -85 °C",
"definition" : "Between -60 °C and -85 °C"
},
{
"code" : "C60-5",
"display" : "Liquid nitrogen, -150 °C to -196 °C",
"definition" : "Liquid nitrogen, -150 °C to -196 °C"
},
{
"code" : "O6-1",
"display" : "ChIP-on-Chip",
"definition" : "ChIP-on-Chip"
},
{
"code" : "O6-2",
"display" : "ChIP-seq",
"definition" : "ChIP-seq"
},
{
"code" : "O6-3",
"display" : "DNA microarray",
"definition" : "DNA microarray"
},
{
"code" : "O6-4",
"display" : "DNA targeted panel sequencing",
"definition" : "DNA targeted panel sequencing"
},
{
"code" : "O6-5",
"display" : "Exome sequencing",
"definition" : "Exome sequencing"
},
{
"code" : "O6-6",
"display" : "Mass spectrometry",
"definition" : "Mass spectrometry"
},
{
"code" : "O6-7",
"display" : "MeDIP-Chip",
"definition" : "MeDIP-Chip"
},
{
"code" : "O6-8",
"display" : "MeDIP-seq",
"definition" : "MeDIP-seq"
},
{
"code" : "O6-9",
"display" : "Methylation microarray",
"definition" : "Methylation microarray"
},
{
"code" : "O6-10",
"display" : "RNA microarray",
"definition" : "RNA microarray"
},
{
"code" : "O6-11",
"display" : "RNA targeted panel sequencing",
"definition" : "RNA targeted panel sequencing"
},
{
"code" : "O6-12",
"display" : "RNA-seq",
"definition" : "RNA-seq"
},
{
"code" : "O6-13",
"display" : "RPPA",
"definition" : "RPPA"
},
{
"code" : "O6-14",
"display" : "Whole genome bisulfite sequencing",
"definition" : "Whole genome bisulfite sequencing"
},
{
"code" : "O6-15",
"display" : "Whole genome sequencing",
"definition" : "Whole genome sequencing"
},
{
"code" : "O6-16",
"display" : "miRNA microarray",
"definition" : "miRNA microarray"
},
{
"code" : "O90-1",
"display" : "Fusion transcript",
"definition" : "Fusion transcript"
},
{
"code" : "O90-3",
"display" : "Population frequency",
"definition" : "Population frequency"
},
{
"code" : "O90-4",
"display" : "Protein reference",
"definition" : "Protein reference"
},
{
"code" : "O90-5",
"display" : "Transcript reference",
"definition" : "Transcript reference"
},
{
"code" : "O90-6",
"display" : "Variant id",
"definition" : "Variant id"
},
{
"code" : "O19-1",
"display" : "MT",
"definition" : "Mitochondrial genetic material"
},
{
"code" : "O19-2",
"display" : "viral",
"definition" : "Viral genetic material"
},
{
"code" : "O19-3",
"display" : "bacterial",
"definition" : "Bacterial genetic material"
},
{
"code" : "O63-1",
"display" : "SIFT",
"definition" : "SIFT"
},
{
"code" : "O63-2",
"display" : "POLYPHEN2_HDIV",
"definition" : "POLYPHEN2_HDIV"
},
{
"code" : "O63-3",
"display" : "MutationTaster",
"definition" : "MutationTaster"
},
{
"code" : "O81-1",
"display" : "Pathogenic",
"definition" : "Pathogenic"
},
{
"code" : "O81-2",
"display" : "Likely pathogenic",
"definition" : "Likely pathogenic"
},
{
"code" : "O81-3",
"display" : "Uncertain significance",
"definition" : "Uncertain significance"
},
{
"code" : "O81-4",
"display" : "Likely benign",
"definition" : "Likely benign"
},
{
"code" : "O81-5",
"display" : "Benign",
"definition" : "Benign"
},
{
"code" : "O16-1",
"display" : "Experimental",
"definition" : "Experimental"
},
{
"code" : "O16-2",
"display" : "By biologist",
"definition" : "By biologist"
},
{
"code" : "O16-3",
"display" : "In silico",
"definition" : "In silico"
},
{
"code" : "O84-1",
"display" : "RawExpression",
"definition" : "RawExpression"
},
{
"code" : "O84-2",
"display" : "NormalizedExpression",
"definition" : "NormalizedExpression"
},
{
"code" : "O84-3",
"display" : "TPMExpression",
"definition" : "TPMExpression"
},
{
"code" : "O84-4",
"display" : "RPKMExpression",
"definition" : "RPKMExpression"
},
{
"code" : "O28-1",
"display" : "readthrough",
"definition" : "readthrough"
},
{
"code" : "C60-6",
"display" : "Other",
"definition" : "Other"
},
{
"code" : "C77-6",
"display" : "Other",
"definition" : "Other"
},
{
"code" : "O6-OTH",
"display" : "Other",
"definition" : "Other"
},
{
"code" : "O13-OTH",
"display" : "Other",
"definition" : "Other"
},
{
"code" : "O7-1",
"display" : "Affymetrix Cytoscan HD"
},
{
"code" : "O7-2",
"display" : "Affymetrix EMET Plus Premier Pack"
},
{
"code" : "O7-3",
"display" : "Affymetrix Genome-Wide Human SNP Array 5.0"
},
{
"code" : "O7-4",
"display" : "Affymetrix Genome-Wide Human SNP Array 6.0"
},
{
"code" : "O7-5",
"display" : "Affymetrix HT Human Genome U133A Array Plate Set"
},
{
"code" : "O7-6",
"display" : "Affymetrix Human Exon 1.0 ST"
},
{
"code" : "O7-7",
"display" : "Affymetrix Human Gene 1.0 ST"
},
{
"code" : "O7-8",
"display" : "Affymetrix Human Genome U219 Array Plate"
},
{
"code" : "O7-9",
"display" : "Affymetrix Human MIP 330K"
},
{
"code" : "O7-10",
"display" : "Affymetrix Human U133 Plus 2.0"
},
{
"code" : "O7-11",
"display" : "Affymetrix Human U133 Plus PM"
},
{
"code" : "O7-12",
"display" : "Affymetrix Mapping 100K Array Set"
},
{
"code" : "O7-13",
"display" : "Affymetrix Mapping 10K 2.0 Array Set"
},
{
"code" : "O7-14",
"display" : "Affymetrix Mapping 500K Array Set"
},
{
"code" : "O7-15",
"display" : "Affymetrix OncoScan FFPE Express 2.0"
},
{
"code" : "O7-16",
"display" : "Agilent 244K Custom Gene Expression G4502A-07"
},
{
"code" : "O7-17",
"display" : "Agilent 244K Custom Gene Expression G4502A-07-1"
},
{
"code" : "O7-18",
"display" : "Agilent 244K Custom Gene Expression G4502A-07-2"
},
{
"code" : "O7-19",
"display" : "Agilent 244K Custom Gene Expression G4502A-07-3"
},
{
"code" : "O7-20",
"display" : "Agilent 8 x 15K Human miRNA-specific microarray"
},
{
"code" : "O7-21",
"display" : "Agilent Human CGH 1x1M"
},
{
"code" : "O7-22",
"display" : "Agilent Human CGH 2x400K"
},
{
"code" : "O7-23",
"display" : "Agilent Human CGH 4x180K"
},
{
"code" : "O7-24",
"display" : "Agilent Human CGH 8x60K"
},
{
"code" : "O7-25",
"display" : "Agilent Human CNV 2x400K"
},
{
"code" : "O7-26",
"display" : "Agilent Human CNV Association 2x105K"
},
{
"code" : "O7-27",
"display" : "Agilent Human CpG Island Microarray Kit"
},
{
"code" : "O7-28",
"display" : "Agilent Human Genome 105A"
},
{
"code" : "O7-29",
"display" : "Agilent Human Genome 244A"
},
{
"code" : "O7-30",
"display" : "Agilent Human Genome 44K"
},
{
"code" : "O7-31",
"display" : "Agilent Human Genome CGH Custom Microaary 2x415K"
},
{
"code" : "O7-32",
"display" : "Agilent Human miRNA Microarray Kit (v2)"
},
{
"code" : "O7-33",
"display" : "Agilent Human Promoter ChIP-on-chip Microarray Set"
},
{
"code" : "O7-34",
"display" : "Agilent Human SpliceArray"
},
{
"code" : "O7-35",
"display" : "Agilent Whole Human Genome Oligo Microarray Kit"
},
{
"code" : "O7-36",
"display" : "Almac Human CRC"
},
{
"code" : "O7-37",
"display" : "capillary sequencing"
},
{
"code" : "O7-38",
"display" : "Complete Genomics"
},
{
"code" : "O7-39",
"display" : "Custom-designed cDNA array"
},
{
"code" : "O7-40",
"display" : "Custom-designed gene expression array"
},
{
"code" : "O7-41",
"display" : "Helicos sequencing"
},
{
"code" : "O7-42",
"display" : "HumanOmni2.5-8 BeadChip Kit"
},
{
"code" : "O7-43",
"display" : "Illumina GA sequencing"
},
{
"code" : "O7-44",
"display" : "Illumina goldengate methylation"
},
{
"code" : "O7-45",
"display" : "Illumina GoldenGate Methylation Cancer Panel I"
},
{
"code" : "O7-46",
"display" : "Illumina HiSeq"
},
{
"code" : "O7-47",
"display" : "Illumina HiSeq X Ten"
},
{
"code" : "O7-48",
"display" : "Illumina Human Omni1-Quad beadchip"
},
{
"code" : "O7-49",
"display" : "Illumina Human1M OmniQuad chip"
},
{
"code" : "O7-50",
"display" : "Illumina human1m-duo"
},
{
"code" : "O7-51",
"display" : "Illumina human510s-duo"
},
{
"code" : "O7-52",
"display" : "Illumina human660w-quad"
},
{
"code" : "O7-53",
"display" : "Illumina HumanCNV370-Duo v1.0 BeadChip"
},
{
"code" : "O7-54",
"display" : "Illumina humancytosnp-12"
},
{
"code" : "O7-55",
"display" : "Illumina HumanHap550"
},
{
"code" : "O7-56",
"display" : "Illumina HumanHT-12 v4.0 beadchip"
},
{
"code" : "O7-57",
"display" : "Illumina humanht-16"
},
{
"code" : "O7-58",
"display" : "Illumina humanht-17"
},
{
"code" : "O7-59",
"display" : "Illumina humanmethylation27"
},
{
"code" : "O7-60",
"display" : "Illumina HumanOmniExpress BeadChip"
},
{
"code" : "O7-61",
"display" : "Illumina HumanRef-8 v3.0 beadchip"
},
{
"code" : "O7-62",
"display" : "Illumina HumanWG-6 v3.0 beadchip"
},
{
"code" : "O7-63",
"display" : "Illumina Infinium HumanMethylation450"
},
{
"code" : "O7-64",
"display" : "Illumina microRNA Expression Profiling Panel"
},
{
"code" : "O7-65",
"display" : "Illumina MiSeq Personal Sequencer"
},
{
"code" : "O7-66",
"display" : "Ion Torrent PGM"
},
{
"code" : "O7-67",
"display" : "Ion Torrent Proton"
},
{
"code" : "O7-68",
"display" : "M.D. Anderson Reverse Phase Protein Array Core"
},
{
"code" : "O7-69",
"display" : "Microsatellite Instability Analysis"
},
{
"code" : "O7-70",
"display" : "nanoString"
},
{
"code" : "O7-71",
"display" : "Nimblegen CGS"
},
{
"code" : "O7-72",
"display" : "Nimblegen Gene Expression 12x135K"
},
{
"code" : "O7-73",
"display" : "Nimblegen Gene Expression 385K"
},
{
"code" : "O7-74",
"display" : "Nimblegen Gene Expression 4x72K"
},
{
"code" : "O7-75",
"display" : "Nimblegen Human CGH 2.1M Whole-Genome v2.0D Array"
},
{
"code" : "O7-76",
"display" : "Nimblegen Human CGH 3x720 Whole-Genome v3.0 Array"
},
{
"code" : "O7-77",
"display" : "Nimblegen Human Methylation 2.1M Whole-Genome sets"
},
{
"code" : "O7-78",
"display" : "Nimblegen Human Methylation 385K Whole-Genome sets"
},
{
"code" : "O7-79",
"display" : "PacBio RS sequencing"
},
{
"code" : "O7-80",
"display" : "PCR"
},
{
"code" : "O7-81",
"display" : "PCR and capillary sequencing"
},
{
"code" : "O7-82",
"display" : "qPCR"
},
{
"code" : "O7-83",
"display" : "Roche 454 sequencing"
},
{
"code" : "O7-84",
"display" : "Sequenom MassARRAY"
},
{
"code" : "O7-85",
"display" : "SOLiD sequencing"
},
{
"code" : "O7-86",
"display" : "Digital PCR"
},
{
"code" : "O7-87",
"display" : "NextSeq 500"
},
{
"code" : "O7-88",
"display" : "NovaSeq"
},
{
"code" : "O7-OTH",
"display" : "Other"
},
{
"code" : "O10-1",
"display" : "Ion AmpliSeq Cancer Hotspot Panel v2"
},
{
"code" : "O10-2",
"display" : "Ion AmpliSeq Colon and Lung Cancer Research Panel v2"
},
{
"code" : "O10-3",
"display" : "Ion AmpliSeq Comprehensive Cancer Panel"
},
{
"code" : "O10-4",
"display" : "Ion AmpliSeq Oncomine Comprehensive Assay"
},
{
"code" : "O10-5",
"display" : "Ion AmpliSeq Oncomine Focus Assay"
},
{
"code" : "O10-6",
"display" : "Ion AmpliSeq TP53 Research Panel"
},
{
"code" : "O10-7",
"display" : "Lyric: Ion AmpliSeq Profiler"
},
{
"code" : "O10-8",
"display" : "QIAGEN GeneRead DNAseq Targeted Panels V2"
},
{
"code" : "O10-9",
"display" : "SAFIR02 Panel"
},
{
"code" : "O10-10",
"display" : "Mosc3"
},
{
"code" : "010-OTH",
"display" : "Other"
}
]
}