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External References

Type Reference Content
web snomed.info bodySite : SNOMED CT 43799004 : Thorax
web snomed.info bodySite : SNOMED CT 76752008 : Breast
web snomed.info bodySite : SNOMED CT 66019005 : Extremity
web pfam.xfam.org url : http://pfam.xfam.org/
web tx.hl7europe.eu What medication was taken
Slice: Unordered, Open by type:$this
Binding: WHO ATC - IPS . ( extensible )
web varnomen.hgvs.org Actual component result
Binding: http://varnomen.hgvs.org ( extensible )
web cancer.fr Search FHIR
web github.com OSIRIS Spec
web cancer.fr inca website
web cancer.fr IG © 2020+ institutcancer . Package inca.fhir.uv.osiris#1.1.0 based on FHIR 4.0.1 . Generated 2025-04-03
Liens: Table des matières | QA | Historique des versions
web sante.gouv.fr Ministère de la Santé
web cancer.fr Institut National du Cancer
web www.sequenceontology.org Structural unit composed of a nucleic acid molecule which controls its own replication through the interaction of specific proteins at one or more origins of replication ( SO:0000340 ).
web www.sequenceontology.org The definition of variant here originates from Sequence ontology ( variant_of ). This element can represent amino acid or nucleic sequence change(including insertion,deletion,SNP,etc.) It can represent some complex mutation or segment variation with the assist of CIGAR string.
web www.sequenceontology.org An allele is one of a set of coexisting sequence variants of a gene ( SO:0001023 ). Nucleotide(s)/amino acids from start position of sequence to stop position of sequence on the positive (+) strand of the observed sequence. When the sequence type is DNA, it should be the sequence on the positive (+) strand. This will lay in the range between variant.start and variant.end.
web www.sequenceontology.org An allele is one of a set of coexisting sequence variants of a gene ( SO:0001023 ). Nucleotide(s)/amino acids from start position of sequence to stop position of sequence on the positive (+) strand of the reference sequence. When the sequence type is DNA, it should be the sequence on the positive (+) strand. This will lay in the range between variant.start and variant.end.
web support.illumina.com Extended CIGAR string for aligning the sequence with reference bases. See detailed documentation here .
web www.sequenceontology.org An experimental feature attribute that defines the quality of the feature in a quantitative way, such as a phred quality score ( SO:0001686 ).
web www.sequenceontology.org The score of an experimentally derived feature such as a p-value ( SO:0001685 ).
web dicom.nema.org If one or more series elements are present in the ImagingStudy, then there shall be one DICOM Study UID identifier (see DICOM PS 3.3 C.7.2 .
web dicom.nema.org See DICOM PS3.3 C.7.3 .
web dicom.nema.org See DICOM PS3.3 C.12.1 .
web dicom.nema.org http://dicom.nema.org/medical/dicom/current/output/chtml/part04/sect_B.5.html#table_B.5-1
web www.rsna.org Unless not suitable, these codes SHALL be taken from http://www.rsna.org/RadLex_Playbook.aspx
( extensible to http://www.rsna.org/RadLex_Playbook.aspx )
web dicom.nema.org Unless not suitable, these codes SHALL be taken from http://dicom.nema.org/medical/dicom/current/output/chtml/part04/sect_B.5.html#table_B.5-1
( extensible to http://dicom.nema.org/medical/dicom/current/output/chtml/part04/sect_B.5.html#table_B.5-1 )
web dicom.nema.org DICOM class type
Binding: http://dicom.nema.org/medical/dicom/current/output/chtml/part04/sect_B.5.html#table_B.5-1 ( extensible ): The sopClass for the instance.


ele-1: All FHIR elements must have a @value or children
web dicom.nema.org http://dicom.nema.org/medical/dicom/current/output/chtml/part04/sect_B.5.html#table_B.5-1
http://dicom.nema.org/medical/dicom/current/output/chtml/part04/sect_B.5.html#table_B.5-1
web www.rsna.org The performed procedure code
Binding: http://www.rsna.org/RadLex_Playbook.aspx ( extensible ): The performed procedure type.


web dicom.nema.org DICOM class type
Binding: http://dicom.nema.org/medical/dicom/current/output/chtml/part04/sect_B.5.html#table_B.5-1 ( extensible ): The sopClass for the instance.

web www.rsna.org http://www.rsna.org/RadLex_Playbook.aspx
http://www.rsna.org/RadLex_Playbook.aspx
web tx.hl7europe.eu Unless not suitable, these codes SHALL be taken from For example codes, see WHO ATC - IPS . http://hl7.org/fhir/ValueSet/medication-codes
( extensible to http://hl7.org/fhir/uv/ips/ValueSet/whoatc-uv-ips )
web tx.hl7europe.eu Unless not suitable, these codes SHALL be taken from WHO ATC - IPS .
( extensible to http://hl7.org/fhir/uv/ips/ValueSet/whoatc-uv-ips )
web tx.hl7europe.eu What medication was taken
Slice: Unordered, Open by type:$this
Binding: WHO ATC - IPS . ( extensible )
ele-1: All FHIR elements must have a @value or children
web tx.hl7europe.eu WhoAtcUvIps .
http://hl7.org/fhir/uv/ips/ValueSet/whoatc-uv-ips
from http://tx.hl7europe.eu/r4
web tx.hl7europe.eu from http://tx.hl7europe.eu/r4
web www.omg.org Mappings for ServD ( http://www.omg.org/spec/ServD/1.0/ )
web openehr.org Mappings for Open EHR Archetype Mapping ( http://openehr.org )
web varnomen.hgvs.org Unless not suitable, these codes SHALL be taken from For codes, see http://varnomen.hgvs.org
( extensible to http://varnomen.hgvs.org )
web varnomen.hgvs.org Unless not suitable, these codes SHALL be taken from http://varnomen.hgvs.org
( extensible to http://varnomen.hgvs.org )
web varnomen.hgvs.org Actual component result
Binding: http://varnomen.hgvs.org ( extensible )
ele-1: All FHIR elements must have a @value or children
web varnomen.hgvs.org http://varnomen.hgvs.org
http://varnomen.hgvs.org
web varnomen.hgvs.org Actual component result
Binding: http://varnomen.hgvs.org ( extensible )
web github.com The FHIR osiris implementation guide has been generated using FSH and the FHIR publisher. Source files including FSH files are available open source on github . You can also download the FHIR NPM Package .
web www.cancer.fr The OSIRIS project is mainly financed by the INCA (Institut National du Cancer, The French National Cancer Institute). The core contributors to the original data model are Institut Curie, Institut Bergonié, the oncology center Léon Bérard, with the contribution of a dozen oncology centre and French hospitals. The current FHIR version of the data model was realized by the same stakeholders in partnership with the start-up Arkhn .
web arkhn.com The OSIRIS project is mainly financed by the INCA (Institut National du Cancer, The French National Cancer Institute). The core contributors to the original data model are Institut Curie, Institut Bergonié, the oncology center Léon Bérard, with the contribution of a dozen oncology centre and French hospitals. The current FHIR version of the data model was realized by the same stakeholders in partnership with the start-up Arkhn .
web cancer.fr

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web sante.gouv.fr Ministère de la Santé
web cancer.fr Insitut Natioanl du Cancer

52 Av. André Morizet, 92100 Boulogne-Billancourt

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