FHIR Osiris Implementation Guide
1.1.0 - trial-implementation
FHIR Osiris Implementation Guide
1.1.0 - trial-implementation
This page is part of the OSIRIS FHIR Implementation Guide (v1.1.0: Release) based on FHIR (HL7® FHIR® Standard) R4. This is the current published version. For a full list of available versions, see the Directory of published versions
| Draft as of 2025-04-03 |
@prefix fhir: <http://hl7.org/fhir/> .
@prefix owl: <http://www.w3.org/2002/07/owl#> .
@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .
# - resource -------------------------------------------------------------------
a fhir:ValueSet ;
fhir:nodeRole fhir:treeRoot ;
fhir:id [ fhir:v "PlatformName"] ; #
fhir:text [
fhir:status [ fhir:v "generated" ] ;
fhir:div "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p class=\"res-header-id\"><b>Generated Narrative: ValueSet PlatformName</b></p><a name=\"PlatformName\"> </a><a name=\"hcPlatformName\"> </a><a name=\"PlatformName-en-US\"> </a><p>Ce jeu de valeur (ValueSet) inclut les codes selon les règles suivantes :</p><ul><li>Include ces codes sont définis dans <code>https://github.com/siric-osiris/OSIRIS</code><table class=\"none\"><tr><td style=\"white-space:nowrap\"><b>Code</b></td><td><b>Display</b></td></tr><tr><td>O7-1</td><td>Affymetrix Cytoscan HD</td></tr><tr><td>O7-2</td><td>Affymetrix EMET Plus Premier Pack</td></tr><tr><td>O7-3</td><td>Affymetrix Genome-Wide Human SNP Array 5.0</td></tr><tr><td>O7-4</td><td>Affymetrix Genome-Wide Human SNP Array 6.0</td></tr><tr><td>O7-5</td><td>Affymetrix HT Human Genome U133A Array Plate Set</td></tr><tr><td>O7-6</td><td>Affymetrix Human Exon 1.0 ST</td></tr><tr><td>O7-7</td><td>Affymetrix Human Gene 1.0 ST</td></tr><tr><td>O7-8</td><td>Affymetrix Human Genome U219 Array Plate</td></tr><tr><td>O7-9</td><td>Affymetrix Human MIP 330K</td></tr><tr><td>O7-10</td><td>Affymetrix Human U133 Plus 2.0</td></tr><tr><td>O7-11</td><td>Affymetrix Human U133 Plus PM</td></tr><tr><td>O7-12</td><td>Affymetrix Mapping 100K Array Set</td></tr><tr><td>O7-13</td><td>Affymetrix Mapping 10K 2.0 Array Set</td></tr><tr><td>O7-14</td><td>Affymetrix Mapping 500K Array Set</td></tr><tr><td>O7-15</td><td>Affymetrix OncoScan FFPE Express 2.0</td></tr><tr><td>O7-16</td><td>Agilent 244K Custom Gene Expression G4502A-07</td></tr><tr><td>O7-17</td><td>Agilent 244K Custom Gene Expression G4502A-07-1</td></tr><tr><td>O7-18</td><td>Agilent 244K Custom Gene Expression G4502A-07-2</td></tr><tr><td>O7-19</td><td>Agilent 244K Custom Gene Expression G4502A-07-3</td></tr><tr><td>O7-20</td><td>Agilent 8 x 15K Human miRNA-specific microarray</td></tr><tr><td>O7-21</td><td>Agilent Human CGH 1x1M</td></tr><tr><td>O7-22</td><td>Agilent Human CGH 2x400K</td></tr><tr><td>O7-23</td><td>Agilent Human CGH 4x180K</td></tr><tr><td>O7-24</td><td>Agilent Human CGH 8x60K</td></tr><tr><td>O7-25</td><td>Agilent Human CNV 2x400K</td></tr><tr><td>O7-26</td><td>Agilent Human CNV Association 2x105K</td></tr><tr><td>O7-27</td><td>Agilent Human CpG Island Microarray Kit</td></tr><tr><td>O7-28</td><td>Agilent Human Genome 105A</td></tr><tr><td>O7-29</td><td>Agilent Human Genome 244A</td></tr><tr><td>O7-30</td><td>Agilent Human Genome 44K</td></tr><tr><td>O7-31</td><td>Agilent Human Genome CGH Custom Microaary 2x415K</td></tr><tr><td>O7-32</td><td>Agilent Human miRNA Microarray Kit (v2)</td></tr><tr><td>O7-33</td><td>Agilent Human Promoter ChIP-on-chip Microarray Set</td></tr><tr><td>O7-34</td><td>Agilent Human SpliceArray</td></tr><tr><td>O7-35</td><td>Agilent Whole Human Genome Oligo Microarray Kit</td></tr><tr><td>O7-36</td><td>Almac Human CRC</td></tr><tr><td>O7-37</td><td>capillary sequencing</td></tr><tr><td>O7-38</td><td>Complete Genomics</td></tr><tr><td>O7-39</td><td>Custom-designed cDNA array</td></tr><tr><td>O7-40</td><td>Custom-designed gene expression array</td></tr><tr><td>O7-41</td><td>Helicos sequencing</td></tr><tr><td>O7-42</td><td>HumanOmni2.5-8 BeadChip Kit</td></tr><tr><td>O7-43</td><td>Illumina GA sequencing</td></tr><tr><td>O7-44</td><td>Illumina goldengate methylation</td></tr><tr><td>O7-45</td><td>Illumina GoldenGate Methylation Cancer Panel I</td></tr><tr><td>O7-46</td><td>Illumina HiSeq</td></tr><tr><td>O7-47</td><td>Illumina HiSeq X Ten</td></tr><tr><td>O7-48</td><td>Illumina Human Omni1-Quad beadchip</td></tr><tr><td>O7-49</td><td>Illumina Human1M OmniQuad chip</td></tr><tr><td>O7-50</td><td>Illumina human1m-duo</td></tr><tr><td>O7-51</td><td>Illumina human510s-duo</td></tr><tr><td>O7-52</td><td>Illumina human660w-quad</td></tr><tr><td>O7-53</td><td>Illumina HumanCNV370-Duo v1.0 BeadChip</td></tr><tr><td>O7-54</td><td>Illumina humancytosnp-12</td></tr><tr><td>O7-55</td><td>Illumina HumanHap550</td></tr><tr><td>O7-56</td><td>Illumina HumanHT-12 v4.0 beadchip</td></tr><tr><td>O7-57</td><td>Illumina humanht-16</td></tr><tr><td>O7-58</td><td>Illumina humanht-17</td></tr><tr><td>O7-59</td><td>Illumina humanmethylation27</td></tr><tr><td>O7-60</td><td>Illumina HumanOmniExpress BeadChip</td></tr><tr><td>O7-61</td><td>Illumina HumanRef-8 v3.0 beadchip</td></tr><tr><td>O7-62</td><td>Illumina HumanWG-6 v3.0 beadchip</td></tr><tr><td>O7-63</td><td>Illumina Infinium HumanMethylation450</td></tr><tr><td>O7-64</td><td>Illumina microRNA Expression Profiling Panel</td></tr><tr><td>O7-65</td><td>Illumina MiSeq Personal Sequencer</td></tr><tr><td>O7-66</td><td>Ion Torrent PGM</td></tr><tr><td>O7-67</td><td>Ion Torrent Proton</td></tr><tr><td>O7-68</td><td>M.D. Anderson Reverse Phase Protein Array Core</td></tr><tr><td>O7-69</td><td>Microsatellite Instability Analysis</td></tr><tr><td>O7-70</td><td>nanoString</td></tr><tr><td>O7-71</td><td>Nimblegen CGS</td></tr><tr><td>O7-72</td><td>Nimblegen Gene Expression 12x135K</td></tr><tr><td>O7-73</td><td>Nimblegen Gene Expression 385K</td></tr><tr><td>O7-74</td><td>Nimblegen Gene Expression 4x72K</td></tr><tr><td>O7-75</td><td>Nimblegen Human CGH 2.1M Whole-Genome v2.0D Array</td></tr><tr><td>O7-76</td><td>Nimblegen Human CGH 3x720 Whole-Genome v3.0 Array</td></tr><tr><td>O7-77</td><td>Nimblegen Human Methylation 2.1M Whole-Genome sets</td></tr><tr><td>O7-78</td><td>Nimblegen Human Methylation 385K Whole-Genome sets</td></tr><tr><td>O7-79</td><td>PacBio RS sequencing</td></tr><tr><td>O7-80</td><td>PCR</td></tr><tr><td>O7-81</td><td>PCR and capillary sequencing</td></tr><tr><td>O7-82</td><td>qPCR</td></tr><tr><td>O7-83</td><td>Roche 454 sequencing</td></tr><tr><td>O7-84</td><td>Sequenom MassARRAY</td></tr><tr><td>O7-85</td><td>SOLiD sequencing</td></tr><tr><td>O7-86</td><td>Digital PCR</td></tr><tr><td>O7-87</td><td>NextSeq 500</td></tr><tr><td>O7-88</td><td>NovaSeq</td></tr><tr><td>O7-OTH</td><td>Other</td></tr></table></li><li>Include ces codes sont définis dans <a href=\"http://terminology.hl7.org/6.2.0/CodeSystem-umls.html\"><code>http://terminology.hl7.org/CodeSystem/umls</code></a><table class=\"none\"><tr><td style=\"white-space:nowrap\"><b>Code</b></td><td><b>Display</b></td></tr><tr><td>C0439673</td><td>Unknown</td></tr></table></li></ul></div>"^^rdf:XMLLiteral
] ; #
fhir:url [ fhir:v "https://ig-osiris.cancer.fr/ig/osiris/ValueSet/PlatformName"^^xsd:anyURI] ; #
fhir:version [ fhir:v "1.1.0"] ; #
fhir:name [ fhir:v "PlatformName"] ; #
fhir:title [ fhir:v "Platform Name"] ; #
fhir:status [ fhir:v "draft"] ; #
fhir:date [ fhir:v "2025-04-03T15:16:31+02:00"^^xsd:dateTime] ; #
fhir:publisher [ fhir:v "institutcancer"] ; #
fhir:contact ( [
fhir:name [ fhir:v "institutcancer" ] ;
( fhir:telecom [
fhir:system [ fhir:v "url" ] ;
fhir:value [ fhir:v "http://cancer.fr" ] ] [
fhir:system [ fhir:v "email" ] ;
fhir:value [ fhir:v "osiris@institutcancer.fr" ] ] )
] [
fhir:name [ fhir:v "Aurélien JOBARD" ] ;
( fhir:telecom [
fhir:system [ fhir:v "email" ] ;
fhir:value [ fhir:v "osiris@institutcancer.fr" ] ] )
] ) ; #
fhir:description [ fhir:v "Platform Name"] ; #
fhir:compose [
( fhir:include [
fhir:system [ fhir:v "https://github.com/siric-osiris/OSIRIS"^^xsd:anyURI ] ;
( fhir:concept [
fhir:code [ fhir:v "O7-1" ] ;
fhir:display [ fhir:v "Affymetrix Cytoscan HD" ] ] [
fhir:code [ fhir:v "O7-2" ] ;
fhir:display [ fhir:v "Affymetrix EMET Plus Premier Pack" ] ] [
fhir:code [ fhir:v "O7-3" ] ;
fhir:display [ fhir:v "Affymetrix Genome-Wide Human SNP Array 5.0" ] ] [
fhir:code [ fhir:v "O7-4" ] ;
fhir:display [ fhir:v "Affymetrix Genome-Wide Human SNP Array 6.0" ] ] [
fhir:code [ fhir:v "O7-5" ] ;
fhir:display [ fhir:v "Affymetrix HT Human Genome U133A Array Plate Set" ] ] [
fhir:code [ fhir:v "O7-6" ] ;
fhir:display [ fhir:v "Affymetrix Human Exon 1.0 ST" ] ] [
fhir:code [ fhir:v "O7-7" ] ;
fhir:display [ fhir:v "Affymetrix Human Gene 1.0 ST" ] ] [
fhir:code [ fhir:v "O7-8" ] ;
fhir:display [ fhir:v "Affymetrix Human Genome U219 Array Plate" ] ] [
fhir:code [ fhir:v "O7-9" ] ;
fhir:display [ fhir:v "Affymetrix Human MIP 330K" ] ] [
fhir:code [ fhir:v "O7-10" ] ;
fhir:display [ fhir:v "Affymetrix Human U133 Plus 2.0" ] ] [
fhir:code [ fhir:v "O7-11" ] ;
fhir:display [ fhir:v "Affymetrix Human U133 Plus PM" ] ] [
fhir:code [ fhir:v "O7-12" ] ;
fhir:display [ fhir:v "Affymetrix Mapping 100K Array Set" ] ] [
fhir:code [ fhir:v "O7-13" ] ;
fhir:display [ fhir:v "Affymetrix Mapping 10K 2.0 Array Set" ] ] [
fhir:code [ fhir:v "O7-14" ] ;
fhir:display [ fhir:v "Affymetrix Mapping 500K Array Set" ] ] [
fhir:code [ fhir:v "O7-15" ] ;
fhir:display [ fhir:v "Affymetrix OncoScan FFPE Express 2.0" ] ] [
fhir:code [ fhir:v "O7-16" ] ;
fhir:display [ fhir:v "Agilent 244K Custom Gene Expression G4502A-07" ] ] [
fhir:code [ fhir:v "O7-17" ] ;
fhir:display [ fhir:v "Agilent 244K Custom Gene Expression G4502A-07-1" ] ] [
fhir:code [ fhir:v "O7-18" ] ;
fhir:display [ fhir:v "Agilent 244K Custom Gene Expression G4502A-07-2" ] ] [
fhir:code [ fhir:v "O7-19" ] ;
fhir:display [ fhir:v "Agilent 244K Custom Gene Expression G4502A-07-3" ] ] [
fhir:code [ fhir:v "O7-20" ] ;
fhir:display [ fhir:v "Agilent 8 x 15K Human miRNA-specific microarray" ] ] [
fhir:code [ fhir:v "O7-21" ] ;
fhir:display [ fhir:v "Agilent Human CGH 1x1M" ] ] [
fhir:code [ fhir:v "O7-22" ] ;
fhir:display [ fhir:v "Agilent Human CGH 2x400K" ] ] [
fhir:code [ fhir:v "O7-23" ] ;
fhir:display [ fhir:v "Agilent Human CGH 4x180K" ] ] [
fhir:code [ fhir:v "O7-24" ] ;
fhir:display [ fhir:v "Agilent Human CGH 8x60K" ] ] [
fhir:code [ fhir:v "O7-25" ] ;
fhir:display [ fhir:v "Agilent Human CNV 2x400K" ] ] [
fhir:code [ fhir:v "O7-26" ] ;
fhir:display [ fhir:v "Agilent Human CNV Association 2x105K" ] ] [
fhir:code [ fhir:v "O7-27" ] ;
fhir:display [ fhir:v "Agilent Human CpG Island Microarray Kit" ] ] [
fhir:code [ fhir:v "O7-28" ] ;
fhir:display [ fhir:v "Agilent Human Genome 105A" ] ] [
fhir:code [ fhir:v "O7-29" ] ;
fhir:display [ fhir:v "Agilent Human Genome 244A" ] ] [
fhir:code [ fhir:v "O7-30" ] ;
fhir:display [ fhir:v "Agilent Human Genome 44K" ] ] [
fhir:code [ fhir:v "O7-31" ] ;
fhir:display [ fhir:v "Agilent Human Genome CGH Custom Microaary 2x415K" ] ] [
fhir:code [ fhir:v "O7-32" ] ;
fhir:display [ fhir:v "Agilent Human miRNA Microarray Kit (v2)" ] ] [
fhir:code [ fhir:v "O7-33" ] ;
fhir:display [ fhir:v "Agilent Human Promoter ChIP-on-chip Microarray Set" ] ] [
fhir:code [ fhir:v "O7-34" ] ;
fhir:display [ fhir:v "Agilent Human SpliceArray" ] ] [
fhir:code [ fhir:v "O7-35" ] ;
fhir:display [ fhir:v "Agilent Whole Human Genome Oligo Microarray Kit" ] ] [
fhir:code [ fhir:v "O7-36" ] ;
fhir:display [ fhir:v "Almac Human CRC" ] ] [
fhir:code [ fhir:v "O7-37" ] ;
fhir:display [ fhir:v "capillary sequencing" ] ] [
fhir:code [ fhir:v "O7-38" ] ;
fhir:display [ fhir:v "Complete Genomics" ] ] [
fhir:code [ fhir:v "O7-39" ] ;
fhir:display [ fhir:v "Custom-designed cDNA array" ] ] [
fhir:code [ fhir:v "O7-40" ] ;
fhir:display [ fhir:v "Custom-designed gene expression array" ] ] [
fhir:code [ fhir:v "O7-41" ] ;
fhir:display [ fhir:v "Helicos sequencing" ] ] [
fhir:code [ fhir:v "O7-42" ] ;
fhir:display [ fhir:v "HumanOmni2.5-8 BeadChip Kit" ] ] [
fhir:code [ fhir:v "O7-43" ] ;
fhir:display [ fhir:v "Illumina GA sequencing" ] ] [
fhir:code [ fhir:v "O7-44" ] ;
fhir:display [ fhir:v "Illumina goldengate methylation" ] ] [
fhir:code [ fhir:v "O7-45" ] ;
fhir:display [ fhir:v "Illumina GoldenGate Methylation Cancer Panel I" ] ] [
fhir:code [ fhir:v "O7-46" ] ;
fhir:display [ fhir:v "Illumina HiSeq" ] ] [
fhir:code [ fhir:v "O7-47" ] ;
fhir:display [ fhir:v "Illumina HiSeq X Ten" ] ] [
fhir:code [ fhir:v "O7-48" ] ;
fhir:display [ fhir:v "Illumina Human Omni1-Quad beadchip" ] ] [
fhir:code [ fhir:v "O7-49" ] ;
fhir:display [ fhir:v "Illumina Human1M OmniQuad chip" ] ] [
fhir:code [ fhir:v "O7-50" ] ;
fhir:display [ fhir:v "Illumina human1m-duo" ] ] [
fhir:code [ fhir:v "O7-51" ] ;
fhir:display [ fhir:v "Illumina human510s-duo" ] ] [
fhir:code [ fhir:v "O7-52" ] ;
fhir:display [ fhir:v "Illumina human660w-quad" ] ] [
fhir:code [ fhir:v "O7-53" ] ;
fhir:display [ fhir:v "Illumina HumanCNV370-Duo v1.0 BeadChip" ] ] [
fhir:code [ fhir:v "O7-54" ] ;
fhir:display [ fhir:v "Illumina humancytosnp-12" ] ] [
fhir:code [ fhir:v "O7-55" ] ;
fhir:display [ fhir:v "Illumina HumanHap550" ] ] [
fhir:code [ fhir:v "O7-56" ] ;
fhir:display [ fhir:v "Illumina HumanHT-12 v4.0 beadchip" ] ] [
fhir:code [ fhir:v "O7-57" ] ;
fhir:display [ fhir:v "Illumina humanht-16" ] ] [
fhir:code [ fhir:v "O7-58" ] ;
fhir:display [ fhir:v "Illumina humanht-17" ] ] [
fhir:code [ fhir:v "O7-59" ] ;
fhir:display [ fhir:v "Illumina humanmethylation27" ] ] [
fhir:code [ fhir:v "O7-60" ] ;
fhir:display [ fhir:v "Illumina HumanOmniExpress BeadChip" ] ] [
fhir:code [ fhir:v "O7-61" ] ;
fhir:display [ fhir:v "Illumina HumanRef-8 v3.0 beadchip" ] ] [
fhir:code [ fhir:v "O7-62" ] ;
fhir:display [ fhir:v "Illumina HumanWG-6 v3.0 beadchip" ] ] [
fhir:code [ fhir:v "O7-63" ] ;
fhir:display [ fhir:v "Illumina Infinium HumanMethylation450" ] ] [
fhir:code [ fhir:v "O7-64" ] ;
fhir:display [ fhir:v "Illumina microRNA Expression Profiling Panel" ] ] [
fhir:code [ fhir:v "O7-65" ] ;
fhir:display [ fhir:v "Illumina MiSeq Personal Sequencer" ] ] [
fhir:code [ fhir:v "O7-66" ] ;
fhir:display [ fhir:v "Ion Torrent PGM" ] ] [
fhir:code [ fhir:v "O7-67" ] ;
fhir:display [ fhir:v "Ion Torrent Proton" ] ] [
fhir:code [ fhir:v "O7-68" ] ;
fhir:display [ fhir:v "M.D. Anderson Reverse Phase Protein Array Core" ] ] [
fhir:code [ fhir:v "O7-69" ] ;
fhir:display [ fhir:v "Microsatellite Instability Analysis" ] ] [
fhir:code [ fhir:v "O7-70" ] ;
fhir:display [ fhir:v "nanoString" ] ] [
fhir:code [ fhir:v "O7-71" ] ;
fhir:display [ fhir:v "Nimblegen CGS" ] ] [
fhir:code [ fhir:v "O7-72" ] ;
fhir:display [ fhir:v "Nimblegen Gene Expression 12x135K" ] ] [
fhir:code [ fhir:v "O7-73" ] ;
fhir:display [ fhir:v "Nimblegen Gene Expression 385K" ] ] [
fhir:code [ fhir:v "O7-74" ] ;
fhir:display [ fhir:v "Nimblegen Gene Expression 4x72K" ] ] [
fhir:code [ fhir:v "O7-75" ] ;
fhir:display [ fhir:v "Nimblegen Human CGH 2.1M Whole-Genome v2.0D Array" ] ] [
fhir:code [ fhir:v "O7-76" ] ;
fhir:display [ fhir:v "Nimblegen Human CGH 3x720 Whole-Genome v3.0 Array" ] ] [
fhir:code [ fhir:v "O7-77" ] ;
fhir:display [ fhir:v "Nimblegen Human Methylation 2.1M Whole-Genome sets" ] ] [
fhir:code [ fhir:v "O7-78" ] ;
fhir:display [ fhir:v "Nimblegen Human Methylation 385K Whole-Genome sets" ] ] [
fhir:code [ fhir:v "O7-79" ] ;
fhir:display [ fhir:v "PacBio RS sequencing" ] ] [
fhir:code [ fhir:v "O7-80" ] ;
fhir:display [ fhir:v "PCR" ] ] [
fhir:code [ fhir:v "O7-81" ] ;
fhir:display [ fhir:v "PCR and capillary sequencing" ] ] [
fhir:code [ fhir:v "O7-82" ] ;
fhir:display [ fhir:v "qPCR" ] ] [
fhir:code [ fhir:v "O7-83" ] ;
fhir:display [ fhir:v "Roche 454 sequencing" ] ] [
fhir:code [ fhir:v "O7-84" ] ;
fhir:display [ fhir:v "Sequenom MassARRAY" ] ] [
fhir:code [ fhir:v "O7-85" ] ;
fhir:display [ fhir:v "SOLiD sequencing" ] ] [
fhir:code [ fhir:v "O7-86" ] ;
fhir:display [ fhir:v "Digital PCR" ] ] [
fhir:code [ fhir:v "O7-87" ] ;
fhir:display [ fhir:v "NextSeq 500" ] ] [
fhir:code [ fhir:v "O7-88" ] ;
fhir:display [ fhir:v "NovaSeq" ] ] [
fhir:code [ fhir:v "O7-OTH" ] ;
fhir:display [ fhir:v "Other" ] ] ) ] [
fhir:system [ fhir:v "http://terminology.hl7.org/CodeSystem/umls"^^xsd:anyURI ] ;
( fhir:concept [
fhir:code [ fhir:v "C0439673" ] ;
fhir:display [ fhir:v "Unknown" ] ] ) ] )
] . #
IG © 2020+ institutcancer. Package inca.fhir.uv.osiris#1.1.0 based on FHIR 4.0.1. Generated 2025-04-03
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