This page is part of the OSIRIS FHIR Implementation Guide (v1.1.0: Release) based on FHIR (HL7® FHIR® Standard) R4. This is the current published version. For a full list of available versions, see the Directory of published versions

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: Biomarker Value Set - XML Representation

Draft as of 2025-04-03

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<ValueSet xmlns="http://hl7.org/fhir">
  <id value="BiomarkerCode"/>
  <text>
    <status value="generated"/>
    <div xmlns="http://www.w3.org/1999/xhtml"><p class="res-header-id"><b>Generated Narrative: ValueSet BiomarkerCode</b></p><a name="BiomarkerCode"> </a><a name="hcBiomarkerCode"> </a><a name="BiomarkerCode-en-US"> </a><ul><li>Include ces codes sont définis dans <code>https://github.com/siric-osiris/OSIRIS</code><table class="none"><tr><td style="white-space:nowrap"><b>Code</b></td><td><b>Display</b></td></tr><tr><td>C39-1</td><td>CKIT</td></tr><tr><td>C39-2</td><td>b-catenine</td></tr><tr><td>C39-3</td><td>CKIT/DOG1</td></tr><tr><td>C39-4</td><td>FOXL2/DICER</td></tr><tr><td>C39-5</td><td>ETV6-NTRK3</td></tr><tr><td>C39-6</td><td>MYB-NFIB</td></tr><tr><td>C39-7</td><td>PDGFRA/FGFR1</td></tr><tr><td>C39-8</td><td>MDM2</td></tr><tr><td>C39-9</td><td>N-MYC</td></tr><tr><td>C39-10</td><td>C-MYC</td></tr><tr><td>C39-11</td><td>BCR-ABL1</td></tr><tr><td>C39-12</td><td>COL1A1</td></tr><tr><td>C39-13</td><td>DDIT3</td></tr><tr><td>C39-14</td><td>EWSR2</td></tr><tr><td>C39-15</td><td>SYT</td></tr><tr><td>C39-16</td><td>CTNNB1</td></tr><tr><td>C39-17</td><td>FUS</td></tr><tr><td>C39-18</td><td>IGH-BCL2</td></tr><tr><td>C39-19</td><td>JAZF1</td></tr><tr><td>C39-20</td><td>FOXO1A</td></tr><tr><td>C39-21</td><td>TFE3</td></tr><tr><td>C39-22</td><td>HPV</td></tr><tr><td>C39-23</td><td>Merkell</td></tr><tr><td>C39-24</td><td>EBER</td></tr><tr><td>C39-25</td><td>PSA</td></tr><tr><td>C39-26</td><td>CA125</td></tr><tr><td>C39-27</td><td>CA153</td></tr><tr><td>C39-28</td><td>CA199</td></tr><tr><td>C39-29</td><td>Ki67</td></tr><tr><td>C39-30</td><td>Nb mitoses</td></tr><tr><td>C39-31</td><td>RO</td></tr><tr><td>C39-32</td><td>RP</td></tr><tr><td>C39-33</td><td>HER2</td></tr><tr><td>C39-34</td><td>PD-L1</td></tr><tr><td>C39-35</td><td>AMHR2</td></tr><tr><td>C39-36</td><td>P53</td></tr><tr><td>C39-37</td><td>BRCA</td></tr><tr><td>C39-38</td><td>MSI</td></tr><tr><td>C39-39</td><td>CDK12</td></tr><tr><td>C39-40</td><td>BRAF</td></tr><tr><td>C39-41</td><td>NRAS-KRAS</td></tr><tr><td>C39-42</td><td>EGFR</td></tr><tr><td>C39-43</td><td>ALK</td></tr><tr><td>C39-44</td><td>ROS1</td></tr><tr><td>C39-45</td><td>C-MET</td></tr><tr><td>C39-46</td><td>ESR1</td></tr><tr><td>C39-47</td><td>PAM50</td></tr><tr><td>C39-48</td><td>ENDOPREDICT</td></tr></table></li></ul></div>
  </text>
  <url value="https://ig-osiris.cancer.fr/ig/osiris/ValueSet/BiomarkerCode"/>
  <version value="1.1.0"/>
  <name value="BiomarkerCode"/>
  <title value="Biomarker Value Set"/>
  <status value="draft"/>
  <date value="2025-04-03T15:16:31+02:00"/>
  <publisher value="institutcancer"/>
  <contact>
    <name value="institutcancer"/>
    <telecom>
      <system value="url"/>
      <value value="http://cancer.fr"/>
    </telecom>
    <telecom>
      <system value="email"/>
      <value value="osiris@institutcancer.fr"/>
    </telecom>
  </contact>
  <contact>
    <name value="Aurélien JOBARD"/>
    <telecom>
      <system value="email"/>
      <value value="osiris@institutcancer.fr"/>
    </telecom>
  </contact>
  <description value="Biomarker types"/>
  <compose>
    <include>
      <system value="https://github.com/siric-osiris/OSIRIS"/>
      <concept>
        <code value="C39-1"/>
        <display value="CKIT"/>
      </concept>
      <concept>
        <code value="C39-2"/>
        <display value="b-catenine"/>
      </concept>
      <concept>
        <code value="C39-3"/>
        <display value="CKIT/DOG1"/>
      </concept>
      <concept>
        <code value="C39-4"/>
        <display value="FOXL2/DICER"/>
      </concept>
      <concept>
        <code value="C39-5"/>
        <display value="ETV6-NTRK3"/>
      </concept>
      <concept>
        <code value="C39-6"/>
        <display value="MYB-NFIB"/>
      </concept>
      <concept>
        <code value="C39-7"/>
        <display value="PDGFRA/FGFR1"/>
      </concept>
      <concept>
        <code value="C39-8"/>
        <display value="MDM2"/>
      </concept>
      <concept>
        <code value="C39-9"/>
        <display value="N-MYC"/>
      </concept>
      <concept>
        <code value="C39-10"/>
        <display value="C-MYC"/>
      </concept>
      <concept>
        <code value="C39-11"/>
        <display value="BCR-ABL1"/>
      </concept>
      <concept>
        <code value="C39-12"/>
        <display value="COL1A1"/>
      </concept>
      <concept>
        <code value="C39-13"/>
        <display value="DDIT3"/>
      </concept>
      <concept>
        <code value="C39-14"/>
        <display value="EWSR2"/>
      </concept>
      <concept>
        <code value="C39-15"/>
        <display value="SYT"/>
      </concept>
      <concept>
        <code value="C39-16"/>
        <display value="CTNNB1"/>
      </concept>
      <concept>
        <code value="C39-17"/>
        <display value="FUS"/>
      </concept>
      <concept>
        <code value="C39-18"/>
        <display value="IGH-BCL2"/>
      </concept>
      <concept>
        <code value="C39-19"/>
        <display value="JAZF1"/>
      </concept>
      <concept>
        <code value="C39-20"/>
        <display value="FOXO1A"/>
      </concept>
      <concept>
        <code value="C39-21"/>
        <display value="TFE3"/>
      </concept>
      <concept>
        <code value="C39-22"/>
        <display value="HPV"/>
      </concept>
      <concept>
        <code value="C39-23"/>
        <display value="Merkell"/>
      </concept>
      <concept>
        <code value="C39-24"/>
        <display value="EBER"/>
      </concept>
      <concept>
        <code value="C39-25"/>
        <display value="PSA"/>
      </concept>
      <concept>
        <code value="C39-26"/>
        <display value="CA125"/>
      </concept>
      <concept>
        <code value="C39-27"/>
        <display value="CA153"/>
      </concept>
      <concept>
        <code value="C39-28"/>
        <display value="CA199"/>
      </concept>
      <concept>
        <code value="C39-29"/>
        <display value="Ki67"/>
      </concept>
      <concept>
        <code value="C39-30"/>
        <display value="Nb mitoses"/>
      </concept>
      <concept>
        <code value="C39-31"/>
        <display value="RO"/>
      </concept>
      <concept>
        <code value="C39-32"/>
        <display value="RP"/>
      </concept>
      <concept>
        <code value="C39-33"/>
        <display value="HER2"/>
      </concept>
      <concept>
        <code value="C39-34"/>
        <display value="PD-L1"/>
      </concept>
      <concept>
        <code value="C39-35"/>
        <display value="AMHR2"/>
      </concept>
      <concept>
        <code value="C39-36"/>
        <display value="P53"/>
      </concept>
      <concept>
        <code value="C39-37"/>
        <display value="BRCA"/>
      </concept>
      <concept>
        <code value="C39-38"/>
        <display value="MSI"/>
      </concept>
      <concept>
        <code value="C39-39"/>
        <display value="CDK12"/>
      </concept>
      <concept>
        <code value="C39-40"/>
        <display value="BRAF"/>
      </concept>
      <concept>
        <code value="C39-41"/>
        <display value="NRAS-KRAS"/>
      </concept>
      <concept>
        <code value="C39-42"/>
        <display value="EGFR"/>
      </concept>
      <concept>
        <code value="C39-43"/>
        <display value="ALK"/>
      </concept>
      <concept>
        <code value="C39-44"/>
        <display value="ROS1"/>
      </concept>
      <concept>
        <code value="C39-45"/>
        <display value="C-MET"/>
      </concept>
      <concept>
        <code value="C39-46"/>
        <display value="ESR1"/>
      </concept>
      <concept>
        <code value="C39-47"/>
        <display value="PAM50"/>
      </concept>
      <concept>
        <code value="C39-48"/>
        <display value="ENDOPREDICT"/>
      </concept>
    </include>
  </compose>
</ValueSet>