FHIR Osiris Implementation Guide
1.1.0 - trial-implementation
FHIR Osiris Implementation Guide
1.1.0 - trial-implementation
This page is part of the OSIRIS FHIR Implementation Guide (v1.1.0: Release) based on FHIR (HL7® FHIR® Standard) R4. This is the current published version. For a full list of available versions, see the Directory of published versions
| Draft as of 2025-04-03 |
{
"resourceType" : "ValueSet",
"id" : "BiomarkerCode",
"text" : {
"status" : "generated",
"div" : "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p class=\"res-header-id\"><b>Generated Narrative: ValueSet BiomarkerCode</b></p><a name=\"BiomarkerCode\"> </a><a name=\"hcBiomarkerCode\"> </a><a name=\"BiomarkerCode-en-US\"> </a><ul><li>Include ces codes sont définis dans <code>https://github.com/siric-osiris/OSIRIS</code><table class=\"none\"><tr><td style=\"white-space:nowrap\"><b>Code</b></td><td><b>Display</b></td></tr><tr><td>C39-1</td><td>CKIT</td></tr><tr><td>C39-2</td><td>b-catenine</td></tr><tr><td>C39-3</td><td>CKIT/DOG1</td></tr><tr><td>C39-4</td><td>FOXL2/DICER</td></tr><tr><td>C39-5</td><td>ETV6-NTRK3</td></tr><tr><td>C39-6</td><td>MYB-NFIB</td></tr><tr><td>C39-7</td><td>PDGFRA/FGFR1</td></tr><tr><td>C39-8</td><td>MDM2</td></tr><tr><td>C39-9</td><td>N-MYC</td></tr><tr><td>C39-10</td><td>C-MYC</td></tr><tr><td>C39-11</td><td>BCR-ABL1</td></tr><tr><td>C39-12</td><td>COL1A1</td></tr><tr><td>C39-13</td><td>DDIT3</td></tr><tr><td>C39-14</td><td>EWSR2</td></tr><tr><td>C39-15</td><td>SYT</td></tr><tr><td>C39-16</td><td>CTNNB1</td></tr><tr><td>C39-17</td><td>FUS</td></tr><tr><td>C39-18</td><td>IGH-BCL2</td></tr><tr><td>C39-19</td><td>JAZF1</td></tr><tr><td>C39-20</td><td>FOXO1A</td></tr><tr><td>C39-21</td><td>TFE3</td></tr><tr><td>C39-22</td><td>HPV</td></tr><tr><td>C39-23</td><td>Merkell</td></tr><tr><td>C39-24</td><td>EBER</td></tr><tr><td>C39-25</td><td>PSA</td></tr><tr><td>C39-26</td><td>CA125</td></tr><tr><td>C39-27</td><td>CA153</td></tr><tr><td>C39-28</td><td>CA199</td></tr><tr><td>C39-29</td><td>Ki67</td></tr><tr><td>C39-30</td><td>Nb mitoses</td></tr><tr><td>C39-31</td><td>RO</td></tr><tr><td>C39-32</td><td>RP</td></tr><tr><td>C39-33</td><td>HER2</td></tr><tr><td>C39-34</td><td>PD-L1</td></tr><tr><td>C39-35</td><td>AMHR2</td></tr><tr><td>C39-36</td><td>P53</td></tr><tr><td>C39-37</td><td>BRCA</td></tr><tr><td>C39-38</td><td>MSI</td></tr><tr><td>C39-39</td><td>CDK12</td></tr><tr><td>C39-40</td><td>BRAF</td></tr><tr><td>C39-41</td><td>NRAS-KRAS</td></tr><tr><td>C39-42</td><td>EGFR</td></tr><tr><td>C39-43</td><td>ALK</td></tr><tr><td>C39-44</td><td>ROS1</td></tr><tr><td>C39-45</td><td>C-MET</td></tr><tr><td>C39-46</td><td>ESR1</td></tr><tr><td>C39-47</td><td>PAM50</td></tr><tr><td>C39-48</td><td>ENDOPREDICT</td></tr></table></li></ul></div>"
},
"url" : "https://ig-osiris.cancer.fr/ig/osiris/ValueSet/BiomarkerCode",
"version" : "1.1.0",
"name" : "BiomarkerCode",
"title" : "Biomarker Value Set",
"status" : "draft",
"date" : "2025-04-03T15:16:31+02:00",
"publisher" : "institutcancer",
"contact" : [
{
"name" : "institutcancer",
"telecom" : [
{
"system" : "url",
"value" : "http://cancer.fr"
},
{
"system" : "email",
"value" : "osiris@institutcancer.fr"
}
]
},
{
"name" : "Aurélien JOBARD",
"telecom" : [
{
"system" : "email",
"value" : "osiris@institutcancer.fr"
}
]
}
],
"description" : "Biomarker types",
"compose" : {
"include" : [
{
"system" : "https://github.com/siric-osiris/OSIRIS",
"concept" : [
{
"code" : "C39-1",
"display" : "CKIT"
},
{
"code" : "C39-2",
"display" : "b-catenine"
},
{
"code" : "C39-3",
"display" : "CKIT/DOG1"
},
{
"code" : "C39-4",
"display" : "FOXL2/DICER"
},
{
"code" : "C39-5",
"display" : "ETV6-NTRK3"
},
{
"code" : "C39-6",
"display" : "MYB-NFIB"
},
{
"code" : "C39-7",
"display" : "PDGFRA/FGFR1"
},
{
"code" : "C39-8",
"display" : "MDM2"
},
{
"code" : "C39-9",
"display" : "N-MYC"
},
{
"code" : "C39-10",
"display" : "C-MYC"
},
{
"code" : "C39-11",
"display" : "BCR-ABL1"
},
{
"code" : "C39-12",
"display" : "COL1A1"
},
{
"code" : "C39-13",
"display" : "DDIT3"
},
{
"code" : "C39-14",
"display" : "EWSR2"
},
{
"code" : "C39-15",
"display" : "SYT"
},
{
"code" : "C39-16",
"display" : "CTNNB1"
},
{
"code" : "C39-17",
"display" : "FUS"
},
{
"code" : "C39-18",
"display" : "IGH-BCL2"
},
{
"code" : "C39-19",
"display" : "JAZF1"
},
{
"code" : "C39-20",
"display" : "FOXO1A"
},
{
"code" : "C39-21",
"display" : "TFE3"
},
{
"code" : "C39-22",
"display" : "HPV"
},
{
"code" : "C39-23",
"display" : "Merkell"
},
{
"code" : "C39-24",
"display" : "EBER"
},
{
"code" : "C39-25",
"display" : "PSA"
},
{
"code" : "C39-26",
"display" : "CA125"
},
{
"code" : "C39-27",
"display" : "CA153"
},
{
"code" : "C39-28",
"display" : "CA199"
},
{
"code" : "C39-29",
"display" : "Ki67"
},
{
"code" : "C39-30",
"display" : "Nb mitoses"
},
{
"code" : "C39-31",
"display" : "RO"
},
{
"code" : "C39-32",
"display" : "RP"
},
{
"code" : "C39-33",
"display" : "HER2"
},
{
"code" : "C39-34",
"display" : "PD-L1"
},
{
"code" : "C39-35",
"display" : "AMHR2"
},
{
"code" : "C39-36",
"display" : "P53"
},
{
"code" : "C39-37",
"display" : "BRCA"
},
{
"code" : "C39-38",
"display" : "MSI"
},
{
"code" : "C39-39",
"display" : "CDK12"
},
{
"code" : "C39-40",
"display" : "BRAF"
},
{
"code" : "C39-41",
"display" : "NRAS-KRAS"
},
{
"code" : "C39-42",
"display" : "EGFR"
},
{
"code" : "C39-43",
"display" : "ALK"
},
{
"code" : "C39-44",
"display" : "ROS1"
},
{
"code" : "C39-45",
"display" : "C-MET"
},
{
"code" : "C39-46",
"display" : "ESR1"
},
{
"code" : "C39-47",
"display" : "PAM50"
},
{
"code" : "C39-48",
"display" : "ENDOPREDICT"
}
]
}
]
}
}