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FHIR Osiris Implementation Guide
1.1.0 - trial-implementation

This page is part of the OSIRIS FHIR Implementation Guide (v1.1.0: Release) based on FHIR (HL7® FHIR® Standard) R4. This is the current published version. For a full list of available versions, see the Directory of published versions

: fhir-osiris-example-biologicalsample-1 - XML Representation

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<Specimen xmlns="http://hl7.org/fhir">
  <id value="fhir-osiris-example-biologicalsample-1"/>
  <meta>
    <profile
             value="https://ig-osiris.cancer.fr/ig/osiris/StructureDefinition/onco-biological-sample"/>
  </meta>
  <text>
    <status value="extensions"/>
    <div xmlns="http://www.w3.org/1999/xhtml"><p class="res-header-id"><b>Generated Narrative: Specimen fhir-osiris-example-biologicalsample-1</b></p><a name="fhir-osiris-example-biologicalsample-1"> </a><a name="hcfhir-osiris-example-biologicalsample-1"> </a><a name="fhir-osiris-example-biologicalsample-1-en-US"> </a><div style="display: inline-block; background-color: #d9e0e7; padding: 6px; margin: 4px; border: 1px solid #8da1b4; border-radius: 5px; line-height: 60%"><p style="margin-bottom: 0px"/><p style="margin-bottom: 0px">Profil: <a href="StructureDefinition-onco-biological-sample.html">Biological Sample</a></p></div><p><b>Biological Sample Origin</b>: <span title="Codes:{https://terminology.arkhn.com/osiris O59-2}">Origin of the sample</span></p><p><b>Based On Condition (Tumor Pathology Event)</b>: <a href="Condition-fhir-osiris-example-TumorPathologyEvent-instance-1.html">Condition C0677930</a></p><p><b>identifier</b>: ech primary</p><p><b>type</b>: <span title="Codes:{http://terminology.hl7.org/CodeSystem/umls C4039816}">C4039816</span></p><p><b>subject</b>: <a href="Patient-L304.html">Patient Anonyme Male, Date de Naissance :1967-11-08</a></p><h3>Collections</h3><table class="grid"><tr><td style="display: none">-</td><td><b>Collected[x]</b></td><td><b>Quantity</b></td><td><b>BodySite</b></td></tr><tr><td style="display: none">*</td><td>2005-12-27</td><td>30 %<span style="background: LightGoldenRodYellow"> (Details: [not stated]  codeC4055283 = 'C4055283')</span></td><td><span title="Codes:{http://terminology.hl7.org/CodeSystem/icd-o-3 C34}">C34</span></td></tr></table><p><b>condition</b>: <span title="Codes:{https://learning.iarc.fr/biobanking/all-resources/sample-and-data-management/miabis Tissue Frozen}">Storage temperature of the sample.</span></p></div>
  </text>
  <extension
             url="https://ig-osiris.cancer.fr/ig/osiris/StructureDefinition/BiologicalSampleOrigin">
    <valueCodeableConcept>
      <coding>
        <system value="https://terminology.arkhn.com/osiris"/>
        <code value="O59-2"/>
      </coding>
      <text value="Origin of the sample"/>
    </valueCodeableConcept>
  </extension>
  <extension
             url="https://ig-osiris.cancer.fr/ig/osiris/StructureDefinition/BasedOnCondition">
    <valueReference>🔗 
      <reference
                 value="Condition/fhir-osiris-example-TumorPathologyEvent-instance-1"/>
    </valueReference>
  </extension>
  <identifier>
    <value value="ech primary"/>
  </identifier>
  <type>
    <coding>
      <system value="http://terminology.hl7.org/CodeSystem/umls"/>
      <code value="C4039816"/>
    </coding>
  </type>
  <subject>🔗 
    <reference value="Patient/L304"/>
  </subject>
  <collection>
    <collectedDateTime value="2005-12-27"/>
    <quantity>
      <value value="30"/>
      <unit value="%"/>
      <code value="C4055283"/>
    </quantity>
    <bodySite>
      <coding>
        <system value="http://terminology.hl7.org/CodeSystem/icd-o-3"/>
        <code value="C34"/>
      </coding>
    </bodySite>
  </collection>
  <condition>
    <coding>
      <system
              value="https://learning.iarc.fr/biobanking/all-resources/sample-and-data-management/miabis"/>
      <code value="Tissue Frozen"/>
    </coding>
    <text value="Storage temperature of the sample."/>
  </condition>
</Specimen>