FHIR Osiris Implementation Guide
1.1.0 - trial-implementation
FHIR Osiris Implementation Guide
1.1.0 - trial-implementation
This page is part of the OSIRIS FHIR Implementation Guide (v1.1.0: Release) based on FHIR (HL7® FHIR® Standard) R4. This is the current published version. For a full list of available versions, see the Directory of published versions
{
"resourceType" : "Specimen",
"id" : "fhir-osiris-example-biologicalsample-1",
"meta" : {
"profile" : [
🔗 "https://ig-osiris.cancer.fr/ig/osiris/StructureDefinition/onco-biological-sample"
]
},
"text" : {
"status" : "extensions",
"div" : "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p class=\"res-header-id\"><b>Generated Narrative: Specimen fhir-osiris-example-biologicalsample-1</b></p><a name=\"fhir-osiris-example-biologicalsample-1\"> </a><a name=\"hcfhir-osiris-example-biologicalsample-1\"> </a><a name=\"fhir-osiris-example-biologicalsample-1-en-US\"> </a><div style=\"display: inline-block; background-color: #d9e0e7; padding: 6px; margin: 4px; border: 1px solid #8da1b4; border-radius: 5px; line-height: 60%\"><p style=\"margin-bottom: 0px\"/><p style=\"margin-bottom: 0px\">Profil: <a href=\"StructureDefinition-onco-biological-sample.html\">Biological Sample</a></p></div><p><b>Biological Sample Origin</b>: <span title=\"Codes:{https://terminology.arkhn.com/osiris O59-2}\">Origin of the sample</span></p><p><b>Based On Condition (Tumor Pathology Event)</b>: <a href=\"Condition-fhir-osiris-example-TumorPathologyEvent-instance-1.html\">Condition C0677930</a></p><p><b>identifier</b>: ech primary</p><p><b>type</b>: <span title=\"Codes:{http://terminology.hl7.org/CodeSystem/umls C4039816}\">C4039816</span></p><p><b>subject</b>: <a href=\"Patient-L304.html\">Patient Anonyme Male, Date de Naissance :1967-11-08</a></p><h3>Collections</h3><table class=\"grid\"><tr><td style=\"display: none\">-</td><td><b>Collected[x]</b></td><td><b>Quantity</b></td><td><b>BodySite</b></td></tr><tr><td style=\"display: none\">*</td><td>2005-12-27</td><td>30 %<span style=\"background: LightGoldenRodYellow\"> (Details: [not stated] codeC4055283 = 'C4055283')</span></td><td><span title=\"Codes:{http://terminology.hl7.org/CodeSystem/icd-o-3 C34}\">C34</span></td></tr></table><p><b>condition</b>: <span title=\"Codes:{https://learning.iarc.fr/biobanking/all-resources/sample-and-data-management/miabis Tissue Frozen}\">Storage temperature of the sample.</span></p></div>"
},
"extension" : [
{
"url" : "https://ig-osiris.cancer.fr/ig/osiris/StructureDefinition/BiologicalSampleOrigin",
"valueCodeableConcept" : {
"coding" : [
{
"system" : "https://terminology.arkhn.com/osiris",
"code" : "O59-2"
}
],
"text" : "Origin of the sample"
}
},
{
"url" : "https://ig-osiris.cancer.fr/ig/osiris/StructureDefinition/BasedOnCondition",
"valueReference" : {
🔗 "reference" : "Condition/fhir-osiris-example-TumorPathologyEvent-instance-1"
}
}
],
"identifier" : [
{
"value" : "ech primary"
}
],
"type" : {
"coding" : [
{
"system" : "http://terminology.hl7.org/CodeSystem/umls",
"code" : "C4039816"
}
]
},
"subject" : {
🔗 "reference" : "Patient/L304"
},
"collection" : {
"collectedDateTime" : "2005-12-27",
"quantity" : {
"value" : 30,
"unit" : "%",
"code" : "C4055283"
},
"bodySite" : {
"coding" : [
{
"system" : "http://terminology.hl7.org/CodeSystem/icd-o-3",
"code" : "C34"
}
]
}
},
"condition" : [
{
"coding" : [
{
"system" : "https://learning.iarc.fr/biobanking/all-resources/sample-and-data-management/miabis",
"code" : "Tissue Frozen"
}
],
"text" : "Storage temperature of the sample."
}
]
}