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FHIR Osiris Implementation Guide
1.1.0 - trial-implementation

This page is part of the OSIRIS FHIR Implementation Guide (v1.1.0: Release) based on FHIR (HL7® FHIR® Standard) R4. This is the current published version. For a full list of available versions, see the Directory of published versions

: fhir-osiris-example-sequencinganalysis-2 - TTL Representation

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@prefix fhir: <http://hl7.org/fhir/> .
@prefix loinc: <https://loinc.org/rdf/> .
@prefix owl: <http://www.w3.org/2002/07/owl#> .
@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .

# - resource -------------------------------------------------------------------

 a fhir:Observation ;
  fhir:nodeRole fhir:treeRoot ;
  fhir:id [ fhir:v "fhir-osiris-example-sequencinganalysis-2"] ; # 
  fhir:meta [
    ( fhir:profile [
fhir:v "https://ig-osiris.cancer.fr/ig/osiris/StructureDefinition/sequencing-analysis"^^xsd:anyURI ;
fhir:link <https://ig-osiris.cancer.fr/ig/osiris/StructureDefinition/sequencing-analysis>     ] )
  ] ; # 
  fhir:text [
fhir:status [ fhir:v "generated" ] ;
fhir:div "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p class=\"res-header-id\"><b>Generated Narrative: Observation fhir-osiris-example-sequencinganalysis-2</b></p><a name=\"fhir-osiris-example-sequencinganalysis-2\"> </a><a name=\"hcfhir-osiris-example-sequencinganalysis-2\"> </a><a name=\"fhir-osiris-example-sequencinganalysis-2-en-US\"> </a><div style=\"display: inline-block; background-color: #d9e0e7; padding: 6px; margin: 4px; border: 1px solid #8da1b4; border-radius: 5px; line-height: 60%\"><p style=\"margin-bottom: 0px\"/><p style=\"margin-bottom: 0px\">Profil: <a href=\"StructureDefinition-sequencing-analysis.html\">Sequencing Analysis</a></p></div><p><b>status</b>: Final</p><p><b>code</b>: <span title=\"Codes:{https://terminology.arkhn.com/osiris C37-3}\">Omic</span></p><p><b>subject</b>: <a href=\"Patient-L304.html\">Patient Anonyme Male, Date de Naissance :1967-11-08</a></p><p><b>focus</b>: <a href=\"Condition-fhir-osiris-example-TumorPathologyEvent-instance-2.html\">Condition C0521158</a></p><p><b>effective</b>: 2018-02-07</p><p><b>method</b>: <span title=\"Codes:{https://github.com/siric-osiris/OSIRIS O6-12}\">O6-12</span></p><p><b>specimen</b>: <a href=\"Specimen-fhir-osiris-example-biologicalsample-2.html\">Specimen : extension = Tumoral,-&gt;Condition C0677930; identifier = ech 2; type = C1519524; condition = FFPE</a></p><p><b>device</b>: <a href=\"Device-fhir-osiris-example-sequencingdevice-2.html\">Device : identifier =  ; type = O7-46</a></p><blockquote><p><b>component</b></p><p><b>code</b>: <span title=\"Codes:{http://terminology.hl7.org/CodeSystem/umls C0162801}\">C0162801</span></p><p><b>value</b>: RNAseq pipeline v3.2</p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: <span title=\"Codes:{http://terminology.hl7.org/CodeSystem/umls 258049002}\">258049002</span></p><p><b>value</b>: 2017-09-19</p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: <span title=\"Codes:{http://terminology.hl7.org/CodeSystem/umls C3260254}\">C3260254</span></p><p><b>value</b>: 50</p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: <span title=\"Codes:{http://terminology.hl7.org/CodeSystem/umls C0032246}\">C0032246</span></p><p><b>value</b>: <span title=\"Codes:{https://github.com/siric-osiris/OSIRIS O13-2}\">O13-2</span></p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: <span title=\"Codes:{http://loinc.org LA26327-9}\">Intrachromosomal breakpoint</span></p></blockquote></div>"^^rdf:XMLLiteral
  ] ; # 
  fhir:status [ fhir:v "final"] ; # 
  fhir:code [
    ( fhir:coding [
fhir:system [ fhir:v "https://terminology.arkhn.com/osiris"^^xsd:anyURI ] ;
fhir:code [ fhir:v "C37-3" ]     ] )
  ] ; # 
  fhir:subject [
fhir:reference [ fhir:v "Patient/L304" ]
  ] ; # 
  fhir:focus ( [
fhir:reference [ fhir:v "Condition/fhir-osiris-example-TumorPathologyEvent-instance-2" ]
  ] ) ; # 
  fhir:effective [
a fhir:dateTime ;
fhir:v "2018-02-07"^^xsd:date
  ] ; # 
  fhir:method [
    ( fhir:coding [
fhir:system [ fhir:v "https://github.com/siric-osiris/OSIRIS"^^xsd:anyURI ] ;
fhir:code [ fhir:v "O6-12" ]     ] )
  ] ; # 
  fhir:specimen [
fhir:reference [ fhir:v "Specimen/fhir-osiris-example-biologicalsample-2" ]
  ] ; # 
  fhir:device [
fhir:reference [ fhir:v "Device/fhir-osiris-example-sequencingdevice-2" ]
  ] ; # 
  fhir:component ( [
fhir:code [
      ( fhir:coding [
fhir:system [ fhir:v "http://terminology.hl7.org/CodeSystem/umls"^^xsd:anyURI ] ;
fhir:code [ fhir:v "C0162801" ]       ] )     ] ;
fhir:value [
a fhir:string ;
fhir:v "RNAseq pipeline v3.2"     ]
  ] [
fhir:code [
      ( fhir:coding [
fhir:system [ fhir:v "http://terminology.hl7.org/CodeSystem/umls"^^xsd:anyURI ] ;
fhir:code [ fhir:v "258049002" ]       ] )     ] ;
fhir:value [
a fhir:dateTime ;
fhir:v "2017-09-19"^^xsd:date     ]
  ] [
fhir:code [
      ( fhir:coding [
fhir:system [ fhir:v "http://terminology.hl7.org/CodeSystem/umls"^^xsd:anyURI ] ;
fhir:code [ fhir:v "C3260254" ]       ] )     ] ;
fhir:value [
a fhir:Quantity ;
fhir:value [ fhir:v "50"^^xsd:decimal ]     ]
  ] [
fhir:code [
      ( fhir:coding [
fhir:system [ fhir:v "http://terminology.hl7.org/CodeSystem/umls"^^xsd:anyURI ] ;
fhir:code [ fhir:v "C0032246" ]       ] )     ] ;
fhir:value [
a fhir:CodeableConcept ;
      ( fhir:coding [
fhir:system [ fhir:v "https://github.com/siric-osiris/OSIRIS"^^xsd:anyURI ] ;
fhir:code [ fhir:v "O13-2" ]       ] )     ]
  ] [
fhir:code [
      ( fhir:coding [
a loinc:LA26327-9 ;
fhir:system [ fhir:v "http://loinc.org"^^xsd:anyURI ] ;
fhir:code [ fhir:v "LA26327-9" ]       ] )     ]
  ] ) . #