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FHIR Osiris Implementation Guide
1.1.0 - trial-implementation

This page is part of the OSIRIS FHIR Implementation Guide (v1.1.0: Release) based on FHIR (HL7® FHIR® Standard) R4. This is the current published version. For a full list of available versions, see the Directory of published versions

: fhir-osiris-example-sequencinganalysis-2 - JSON Representation

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{
  "resourceType" : "Observation",
  "id" : "fhir-osiris-example-sequencinganalysis-2",
  "meta" : {
    "profile" : [
      🔗 "https://ig-osiris.cancer.fr/ig/osiris/StructureDefinition/sequencing-analysis"
    ]
  },
  "text" : {
    "status" : "generated",
    "div" : "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p class=\"res-header-id\"><b>Generated Narrative: Observation fhir-osiris-example-sequencinganalysis-2</b></p><a name=\"fhir-osiris-example-sequencinganalysis-2\"> </a><a name=\"hcfhir-osiris-example-sequencinganalysis-2\"> </a><a name=\"fhir-osiris-example-sequencinganalysis-2-en-US\"> </a><div style=\"display: inline-block; background-color: #d9e0e7; padding: 6px; margin: 4px; border: 1px solid #8da1b4; border-radius: 5px; line-height: 60%\"><p style=\"margin-bottom: 0px\"/><p style=\"margin-bottom: 0px\">Profil: <a href=\"StructureDefinition-sequencing-analysis.html\">Sequencing Analysis</a></p></div><p><b>status</b>: Final</p><p><b>code</b>: <span title=\"Codes:{https://terminology.arkhn.com/osiris C37-3}\">Omic</span></p><p><b>subject</b>: <a href=\"Patient-L304.html\">Patient Anonyme Male, Date de Naissance :1967-11-08</a></p><p><b>focus</b>: <a href=\"Condition-fhir-osiris-example-TumorPathologyEvent-instance-2.html\">Condition C0521158</a></p><p><b>effective</b>: 2018-02-07</p><p><b>method</b>: <span title=\"Codes:{https://github.com/siric-osiris/OSIRIS O6-12}\">O6-12</span></p><p><b>specimen</b>: <a href=\"Specimen-fhir-osiris-example-biologicalsample-2.html\">Specimen : extension = Tumoral,-&gt;Condition C0677930; identifier = ech 2; type = C1519524; condition = FFPE</a></p><p><b>device</b>: <a href=\"Device-fhir-osiris-example-sequencingdevice-2.html\">Device : identifier =  ; type = O7-46</a></p><blockquote><p><b>component</b></p><p><b>code</b>: <span title=\"Codes:{http://terminology.hl7.org/CodeSystem/umls C0162801}\">C0162801</span></p><p><b>value</b>: RNAseq pipeline v3.2</p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: <span title=\"Codes:{http://terminology.hl7.org/CodeSystem/umls 258049002}\">258049002</span></p><p><b>value</b>: 2017-09-19</p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: <span title=\"Codes:{http://terminology.hl7.org/CodeSystem/umls C3260254}\">C3260254</span></p><p><b>value</b>: 50</p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: <span title=\"Codes:{http://terminology.hl7.org/CodeSystem/umls C0032246}\">C0032246</span></p><p><b>value</b>: <span title=\"Codes:{https://github.com/siric-osiris/OSIRIS O13-2}\">O13-2</span></p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: <span title=\"Codes:{http://loinc.org LA26327-9}\">Intrachromosomal breakpoint</span></p></blockquote></div>"
  },
  "status" : "final",
  "code" : {
    "coding" : [
      {
        "system" : "https://terminology.arkhn.com/osiris",
        "code" : "C37-3"
      }
    ]
  },
  "subject" : {
    🔗 "reference" : "Patient/L304"
  },
  "focus" : [
    {
      🔗 "reference" : "Condition/fhir-osiris-example-TumorPathologyEvent-instance-2"
    }
  ],
  "effectiveDateTime" : "2018-02-07",
  "method" : {
    "coding" : [
      {
        "system" : "https://github.com/siric-osiris/OSIRIS",
        "code" : "O6-12"
      }
    ]
  },
  "specimen" : {
    🔗 "reference" : "Specimen/fhir-osiris-example-biologicalsample-2"
  },
  "device" : {
    🔗 "reference" : "Device/fhir-osiris-example-sequencingdevice-2"
  },
  "component" : [
    {
      "code" : {
        "coding" : [
          {
            "system" : "http://terminology.hl7.org/CodeSystem/umls",
            "code" : "C0162801"
          }
        ]
      },
      "valueString" : "RNAseq pipeline v3.2"
    },
    {
      "code" : {
        "coding" : [
          {
            "system" : "http://terminology.hl7.org/CodeSystem/umls",
            "code" : "258049002"
          }
        ]
      },
      "valueDateTime" : "2017-09-19"
    },
    {
      "code" : {
        "coding" : [
          {
            "system" : "http://terminology.hl7.org/CodeSystem/umls",
            "code" : "C3260254"
          }
        ]
      },
      "valueQuantity" : {
        "value" : 50
      }
    },
    {
      "code" : {
        "coding" : [
          {
            "system" : "http://terminology.hl7.org/CodeSystem/umls",
            "code" : "C0032246"
          }
        ]
      },
      "valueCodeableConcept" : {
        "coding" : [
          {
            "system" : "https://github.com/siric-osiris/OSIRIS",
            "code" : "O13-2"
          }
        ]
      }
    },
    {
      "code" : {
        "coding" : [
          {
            "system" : "http://loinc.org",
            "code" : "LA26327-9"
          }
        ]
      }
    }
  ]
}