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FHIR Osiris Implementation Guide
1.1.0 - trial-implementation

This page is part of the OSIRIS FHIR Implementation Guide (v1.1.0: Release) based on FHIR (HL7® FHIR® Standard) R4. This is the current published version. For a full list of available versions, see the Directory of published versions

: Alteration Type Value Set - JSON Representation

Draft as of 2025-04-03

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{
  "resourceType" : "ValueSet",
  "id" : "AlterationType",
  "text" : {
    "status" : "generated",
    "div" : "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p class=\"res-header-id\"><b>Generated Narrative: ValueSet AlterationType</b></p><a name=\"AlterationType\"> </a><a name=\"hcAlterationType\"> </a><a name=\"AlterationType-en-US\"> </a><p>Ce jeu de valeur (ValueSet) inclut les codes selon les règles suivantes :</p><ul><li>Include ces codes sont définis dans <code>https://github.com/siric-osiris/OSIRIS</code><table class=\"none\"><tr><td style=\"white-space:nowrap\"><b>Code</b></td><td><b>Display</b></td></tr><tr><td>O15-1</td><td>Gene expression</td></tr><tr><td>O15-2</td><td>Protein expression</td></tr><tr><td>O15-3</td><td>Fusion</td></tr><tr><td>O15-4</td><td>Copy number variation</td></tr><tr><td>O15-5</td><td>Genetic variant</td></tr><tr><td>O15-6</td><td>Structural alteration</td></tr><tr><td>O15-7</td><td>Transcription factor</td></tr><tr><td>O15-8</td><td>Histone marks</td></tr><tr><td>O15-9</td><td>Transcript isoform</td></tr><tr><td>O15-10</td><td>Viral insertion site</td></tr></table></li><li>Include ces codes sont définis dans <a href=\"http://terminology.hl7.org/6.2.0/CodeSystem-umls.html\"><code>http://terminology.hl7.org/CodeSystem/umls</code></a><table class=\"none\"><tr><td style=\"white-space:nowrap\"><b>Code</b></td><td><b>Display</b></td></tr><tr><td>C0439673</td><td>Unknown</td></tr></table></li></ul></div>"
  },
  "url" : "https://ig-osiris.cancer.fr/ig/osiris/ValueSet/AlterationType",
  "version" : "1.1.0",
  "name" : "AlterationType",
  "title" : "Alteration Type Value Set",
  "status" : "draft",
  "date" : "2025-04-03T15:16:31+02:00",
  "publisher" : "institutcancer",
  "contact" : [
    {
      "name" : "institutcancer",
      "telecom" : [
        {
          "system" : "url",
          "value" : "http://cancer.fr"
        },
        {
          "system" : "email",
          "value" : "osiris@institutcancer.fr"
        }
      ]
    },
    {
      "name" : "Aurélien JOBARD",
      "telecom" : [
        {
          "system" : "email",
          "value" : "osiris@institutcancer.fr"
        }
      ]
    }
  ],
  "description" : "Alteration type",
  "compose" : {
    "include" : [
      {
        "system" : "https://github.com/siric-osiris/OSIRIS",
        "concept" : [
          {
            "code" : "O15-1",
            "display" : "Gene expression"
          },
          {
            "code" : "O15-2",
            "display" : "Protein expression"
          },
          {
            "code" : "O15-3",
            "display" : "Fusion"
          },
          {
            "code" : "O15-4",
            "display" : "Copy number variation"
          },
          {
            "code" : "O15-5",
            "display" : "Genetic variant"
          },
          {
            "code" : "O15-6",
            "display" : "Structural alteration"
          },
          {
            "code" : "O15-7",
            "display" : "Transcription factor"
          },
          {
            "code" : "O15-8",
            "display" : "Histone marks"
          },
          {
            "code" : "O15-9",
            "display" : "Transcript isoform"
          },
          {
            "code" : "O15-10",
            "display" : "Viral insertion site"
          }
        ]
      },
      {
        "system" : "http://terminology.hl7.org/CodeSystem/umls",
        "concept" : [
          {
            "code" : "C0439673",
            "display" : "Unknown"
          }
        ]
      }
    ]
  }
}