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FHIR Osiris Implementation Guide
1.1.0 - trial-implementation

This page is part of the OSIRIS FHIR Implementation Guide (v1.1.0: Release) based on FHIR (HL7® FHIR® Standard) R4. This is the current published version. For a full list of available versions, see the Directory of published versions

: fhir-osiris-example-sequencinganalysis-3 - XML Representation

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<Observation xmlns="http://hl7.org/fhir">
  <id value="fhir-osiris-example-sequencinganalysis-3"/>
  <meta>
    <profile
             value="https://ig-osiris.cancer.fr/ig/osiris/StructureDefinition/sequencing-analysis"/>
  </meta>
  <text>
    <status value="generated"/>
    <div xmlns="http://www.w3.org/1999/xhtml"><p class="res-header-id"><b>Generated Narrative: Observation fhir-osiris-example-sequencinganalysis-3</b></p><a name="fhir-osiris-example-sequencinganalysis-3"> </a><a name="hcfhir-osiris-example-sequencinganalysis-3"> </a><a name="fhir-osiris-example-sequencinganalysis-3-en-US"> </a><div style="display: inline-block; background-color: #d9e0e7; padding: 6px; margin: 4px; border: 1px solid #8da1b4; border-radius: 5px; line-height: 60%"><p style="margin-bottom: 0px"/><p style="margin-bottom: 0px">Profil: <a href="StructureDefinition-sequencing-analysis.html">Sequencing Analysis</a></p></div><p><b>status</b>: Final</p><p><b>code</b>: <span title="Codes:{https://terminology.arkhn.com/osiris C37-3}">Omic</span></p><p><b>subject</b>: <a href="Patient-L304.html">Patient Anonyme Male, Date de Naissance :1967-11-08</a></p><p><b>focus</b>: <a href="Condition-fhir-osiris-example-TumorPathologyEvent-instance-2.html">Condition C0521158</a></p><p><b>effective</b>: 2018-02-07</p><p><b>method</b>: <span title="Codes:{https://github.com/siric-osiris/OSIRIS O6-12}">O6-12</span></p><p><b>specimen</b>: <a href="Specimen-fhir-osiris-example-biologicalsample-2.html">Specimen : extension = Tumoral,-&gt;Condition C0677930; identifier = ech 2; type = C1519524; condition = FFPE</a></p><p><b>device</b>: <a href="Device-fhir-osiris-example-sequencingdevice-3.html">Device : identifier =  ; type = O7-25</a></p><blockquote><p><b>component</b></p><p><b>code</b>: <span title="Codes:{http://terminology.hl7.org/CodeSystem/umls C0162801}">C0162801</span></p><p><b>value</b>: sbd54dsf57s</p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: <span title="Codes:{http://terminology.hl7.org/CodeSystem/umls 258049002}">258049002</span></p><p><b>value</b>: 2018-02-09</p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: <span title="Codes:{http://loinc.org LA26327-9}">Intrachromosomal breakpoint</span></p><p><b>value</b>: 320</p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: <span title="Codes:{http://terminology.hl7.org/CodeSystem/umls C3260254}">C3260254</span></p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: <span title="Codes:{http://terminology.hl7.org/CodeSystem/umls C0032246}">C0032246</span></p></blockquote></div>
  </text>
  <status value="final"/>
  <code>
    <coding>
      <system value="https://terminology.arkhn.com/osiris"/>
      <code value="C37-3"/>
    </coding>
  </code>
  <subject>🔗 
    <reference value="Patient/L304"/>
  </subject>
  <focus>🔗 
    <reference
               value="Condition/fhir-osiris-example-TumorPathologyEvent-instance-2"/>
  </focus>
  <effectiveDateTime value="2018-02-07"/>
  <method>
    <coding>
      <system value="https://github.com/siric-osiris/OSIRIS"/>
      <code value="O6-12"/>
    </coding>
  </method>
  <specimen>🔗 
    <reference value="Specimen/fhir-osiris-example-biologicalsample-2"/>
  </specimen>
  <device>🔗 
    <reference value="Device/fhir-osiris-example-sequencingdevice-3"/>
  </device>
  <component>
    <code>
      <coding>
        <system value="http://terminology.hl7.org/CodeSystem/umls"/>
        <code value="C0162801"/>
      </coding>
    </code>
    <valueString value="sbd54dsf57s"/>
  </component>
  <component>
    <code>
      <coding>
        <system value="http://terminology.hl7.org/CodeSystem/umls"/>
        <code value="258049002"/>
      </coding>
    </code>
    <valueDateTime value="2018-02-09"/>
  </component>
  <component>
    <code>
      <coding>
        <system value="http://loinc.org"/>
        <code value="LA26327-9"/>
      </coding>
    </code>
    <valueQuantity>
      <value value="320"/>
    </valueQuantity>
  </component>
  <component>
    <code>
      <coding>
        <system value="http://terminology.hl7.org/CodeSystem/umls"/>
        <code value="C3260254"/>
      </coding>
    </code>
  </component>
  <component>
    <code>
      <coding>
        <system value="http://terminology.hl7.org/CodeSystem/umls"/>
        <code value="C0032246"/>
      </coding>
    </code>
  </component>
</Observation>