onco-biological-sample
type: StructureDefinition
node role: treeRoot
id:
  v: onco-biological-sample
text:
  status:
    v: extensions
  div: Generated Narrative: StructureDefinition onco-biological-sample Nom Drapeaux Card. Type Description et contraintes<img src="[binary]" alt="doco" style="background-color: inherit"/> Specimen 0..* Specimen Sample for analysis Slices pour extension 1..* Extension Extension Slice: Unordered, Open by value:url extension:BiologicalSampleOrigin S 1..1 (Complex) The origin of the sample URL: https://ig-osiris.cancer.fr/ig/osiris/StructureDefinition/BiologicalSampleOrigin Slices pour value[x] Content/Rules for all slices value[x]:valueCodeableConcept 1..1 CodeableConcept The origin of the sample extension:BasedOnCondition S 0..1 (Complex) Tumur Pathology Event concerned by the sample URL: https://ig-osiris.cancer.fr/ig/osiris/StructureDefinition/BasedOnCondition Slices pour value[x] Content/Rules for all slices value[x]:valueReference 0..1 Reference(Tumor Pathology Event) Value of extension identifier S 1..1 Identifier Identifier of the biological sample type S 1..1 CodeableConcept The nature of the sample Binding: Biological Sample Nature Value Set (preferred) subject S 0..1 Reference(Oncology Patient) Where the specimen came from. This may be from patient(s), from a location (e.g., the source of an environmental sample), or a sampling of a substance or a device parent S 0..1 Reference(Biological Sample) Identifier of the parent biological sample collection Slices pour collected[x] 1..1 dateTime Collection time Slice: Unordered, Open by type:$this collected[x]:collectedDateTime S 1..1 dateTime Collection date quantity S 0..1 SimpleQuantity Percentage of tumor cells value 0..1 decimal Numerical value (with implicit precision) unit 0..1 string Unit representation Required Pattern: % code 0..1 code Coded form of the unit Required Pattern: C4055283 bodySite S 1..1 CodeableConcept Topography of the tumor sample Binding: Topography Value Set (preferred) condition S 0..1 CodeableConcept Storage method Binding: Storage temperature Value Set (extensible) text 0..1 string Plain text …
url:
  v: https://ig-osiris.cancer.fr/ig/osiris/StructureDefinition/onco-biological-sample
version:
  v: 1.1.0
name:
  v: BiologicalSample
title:
  v: Biological Sample
status:
  v: draft
date:
  v: 2025-04-03T15:16:31+02:00
publisher:
  v: institutcancer
contact:
  name:
    v: institutcancer
  telecom:
    system:
      v: url
    value:
      v: http://cancer.fr
  telecom:
    system:
      v: email
contact:
  name:
    v: Aurélien JOBARD
  telecom:
    system:
      v: email
description:
  v: Description of a biological sample coming from an oncology Patient, with its storage condition.
fhir version:
  v: 4.0.1
mapping:
  identity:
    v: fhir-osiris
  uri:
    v: Patient
  name:
    v: Fhir-osiris to osiris
mapping:
  identity:
    v: rim
  uri:
    v: http://hl7.org/v3
  name:
    v: RIM Mapping
mapping:
  identity:
    v: w5
  uri:
    v: http://hl7.org/fhir/fivews
  name:
    v: FiveWs Pattern Mapping
mapping:
  identity:
    v: v2
  uri:
    v: http://hl7.org/v2
  name:
    v: HL7 v2 Mapping
kind:
  v: resource
abstract:
  v: false
type:
  v: Specimen
base definition:
  v: http://hl7.org/fhir/StructureDefinition/Specimen
  link: http://hl7.org/fhir/StructureDefinition/Specimen
derivation:
  v: constraint
snapshot:
  extension:
    url:
      v: http://hl7.org/fhir/tools/StructureDefinition/snapshot-base-version
    value: string
      v: 4.0.1
  element:
    id:
      v: Specimen
    path:
      v: Specimen
    short:
      v: Sample for analysis
    definition:
      v: A sample to be used for analysis.
    min:
      v: 0
    max:
      v: *
    base:
      path:
        v: Specimen
      min:
        v: 0
      max:
        v: *
    constraint:
      key:
        v: dom-2
      severity:
        v: error
      human:
        v: If the resource is contained in another resource, it SHALL NOT contain nested Resources
      expression:
        v: contained.contained.empty()
      xpath:
        v: not(parent::f:contained and f:contained)
      source:
        v: http://hl7.org/fhir/StructureDefinition/DomainResource
        link: http://hl7.org/fhir/StructureDefinition/DomainResource
    constraint:
      key:
        v: dom-3
      severity:
        v: error
      human:
        v: If the resource is contained in another resource, it SHALL be referred to from elsewhere in the resource or SHALL refer to the containing resource
      expression:
        v: contained.where((('#'+id in (%resource.descendants().reference | %resource.descendants().as(canonical) | %resource.descendants().as(uri) | %resource.descendants().as(url))) or descendants().where(reference = '#').exists() or descendants().where(as(canonical) = '#').exists() or descendants().where(as(canonical) = '#').exists()).not()).trace('unmatched', id).empty()
      xpath:
        v: not(exists(for $id in f:contained/*/f:id/@value return $contained[not(parent::*/descendant::f:reference/@value=concat('#', $contained/*/id/@value) or descendant::f:reference[@value='#'])]))
      source:
        v: http://hl7.org/fhir/StructureDefinition/DomainResource
        link: http://hl7.org/fhir/StructureDefinition/DomainResource
    constraint:
      key:
        v: dom-4
      severity:
        v: error
      human:
        v: If a resource is contained in another resource, it SHALL NOT have a meta.versionId or a meta.lastUpdated
      expression:
        v: contained.meta.versionId.empty() and contained.meta.lastUpdated.empty()
      xpath:
        v: not(exists(f:contained/*/f:meta/f:versionId)) and not(exists(f:contained/*/f:meta/f:lastUpdated))
      source:
        v: http://hl7.org/fhir/StructureDefinition/DomainResource
        link: http://hl7.org/fhir/StructureDefinition/DomainResource
    constraint:
      key:
        v: dom-5
      severity:
        v: error
      human:
        v: If a resource is contained in another resource, it SHALL NOT have a security label
      expression:
        v: contained.meta.security.empty()
      xpath:
        v: not(exists(f:contained/*/f:meta/f:security))
      source:
        v: http://hl7.org/fhir/StructureDefinition/DomainResource
        link: http://hl7.org/fhir/StructureDefinition/DomainResource
    constraint:
      extension:
        value: boolean
      extension:
        value: markdown
      key:
        v: dom-6
      severity:
        v: warning
      human:
        v: A resource should have narrative for robust management
      expression:
        v: text.`div`.exists()
      xpath:
        v: exists(f:text/h:div)
      source:
        v: http://hl7.org/fhir/StructureDefinition/DomainResource
        link: http://hl7.org/fhir/StructureDefinition/DomainResource
    is modifier:
      v: false
    is summary:
      v: false
    mapping:
      identity:
        v: fhir-osiris
      map:
        v: BiologicalSample
      comment:
        v: Biological sample description
    mapping:
      identity:
        v: rim
      map:
        v: Entity. Role, or Act
    mapping:
      identity:
        v: rim
      map:
        v: Role[classCode=SPEC]

boolean
v: true

markdown
v: When a resource has no narrative, only systems that fully understand the data can display the resource to a human safely. Including a human readable representation in the resource makes for a much more robust eco-system and cheaper handling of resources by intermediary systems. Some ecosystems restrict distribution of resources to only those systems that do fully understand the resources, and as a consequence implementers may believe that the narrative is superfluous. However experience shows that such eco-systems often open up to new participants over time.

id:
  v: Specimen.id
path:
  v: Specimen.id
short:
  v: Logical id of this artifact
definition:
  v: The logical id of the resource, as used in the URL for the resource. Once assigned, this value never changes.
comment:
  v: The only time that a resource does not have an id is when it is being submitted to the server using a create operation.
min:
  v: 0
max:
  v: 1
base:
  path:
    v: Resource.id
  min:
    v: 0
  max:
    v: 1
type:
  extension:
    url:
      v: http://hl7.org/fhir/StructureDefinition/structuredefinition-fhir-type
    value: url
      v: id
  code:
    v: http://hl7.org/fhirpath/System.String
is modifier:
  v: false
is summary:
  v: true

id:
  v: Specimen.meta
path:
  v: Specimen.meta
short:
  v: Metadata about the resource
definition:
  v: The metadata about the resource. This is content that is maintained by the infrastructure. Changes to the content might not always be associated with version changes to the resource.
min:
  v: 0
max:
  v: 1
base:
  path:
    v: Resource.meta
  min:
    v: 0
  max:
    v: 1
type:
  code:
    v: Meta
constraint:
  key:
    v: ele-1
  severity:
    v: error
  human:
    v: All FHIR elements must have a @value or children
  expression:
    v: hasValue() or (children().count() > id.count())
  xpath:
    v: @value|f:*|h:div
  source:
    v: http://hl7.org/fhir/StructureDefinition/Element
    link: http://hl7.org/fhir/StructureDefinition/Element
is modifier:
  v: false
is summary:
  v: true

id:
  v: Specimen.implicitRules
path:
  v: Specimen.implicitRules
short:
  v: A set of rules under which this content was created
definition:
  v: A reference to a set of rules that were followed when the resource was constructed, and which must be understood when processing the content. Often, this is a reference to an implementation guide that defines the special rules along with other profiles etc.
comment:
  v: Asserting this rule set restricts the content to be only understood by a limited set of trading partners. This inherently limits the usefulness of the data in the long term. However, the existing health eco-system is highly fractured, and not yet ready to define, collect, and exchange data in a generally computable sense. Wherever possible, implementers and/or specification writers should avoid using this element. Often, when used, the URL is a reference to an implementation guide that defines these special rules as part of it's narrative along with other profiles, value sets, etc.
min:
  v: 0
max:
  v: 1
base:
  path:
    v: Resource.implicitRules
  min:
    v: 0
  max:
    v: 1
type:
  code:
    v: uri
constraint:
  key:
    v: ele-1
  severity:
    v: error
  human:
    v: All FHIR elements must have a @value or children
  expression:
    v: hasValue() or (children().count() > id.count())
  xpath:
    v: @value|f:*|h:div
  source:
    v: http://hl7.org/fhir/StructureDefinition/Element
    link: http://hl7.org/fhir/StructureDefinition/Element
is modifier:
  v: true
is modifier reason:
  v: This element is labeled as a modifier because the implicit rules may provide additional knowledge about the resource that modifies it's meaning or interpretation
is summary:
  v: true

id:
  v: Specimen.language
path:
  v: Specimen.language
short:
  v: Language of the resource content
definition:
  v: The base language in which the resource is written.
comment:
  v: Language is provided to support indexing and accessibility (typically, services such as text to speech use the language tag). The html language tag in the narrative applies to the narrative. The language tag on the resource may be used to specify the language of other presentations generated from the data in the resource. Not all the content has to be in the base language. The Resource.language should not be assumed to apply to the narrative automatically. If a language is specified, it should it also be specified on the div element in the html (see rules in HTML5 for information about the relationship between xml:lang and the html lang attribute).
min:
  v: 0
max:
  v: 1
base:
  path:
    v: Resource.language
  min:
    v: 0
  max:
    v: 1
type:
  code:
    v: code
constraint:
  key:
    v: ele-1
  severity:
    v: error
  human:
    v: All FHIR elements must have a @value or children
  expression:
    v: hasValue() or (children().count() > id.count())
  xpath:
    v: @value|f:*|h:div
  source:
    v: http://hl7.org/fhir/StructureDefinition/Element
    link: http://hl7.org/fhir/StructureDefinition/Element
is modifier:
  v: false
is summary:
  v: false
binding:
  extension:
    url:
      v: http://hl7.org/fhir/StructureDefinition/elementdefinition-maxValueSet
    value: canonical
      v: http://hl7.org/fhir/ValueSet/all-languages
      link: http://hl7.org/fhir/ValueSet/all-languages
  extension:
    url:
      v: http://hl7.org/fhir/StructureDefinition/elementdefinition-bindingName
    value: string
      v: Language
  strength:
    v: preferred
  description:
    v: A human language.
  value set:
    v: http://hl7.org/fhir/ValueSet/languages
    link: http://hl7.org/fhir/ValueSet/languages

id:
  v: Specimen.text
path:
  v: Specimen.text
short:
  v: Text summary of the resource, for human interpretation
definition:
  v: A human-readable narrative that contains a summary of the resource and can be used to represent the content of the resource to a human. The narrative need not encode all the structured data, but is required to contain sufficient detail to make it "clinically safe" for a human to just read the narrative. Resource definitions may define what content should be represented in the narrative to ensure clinical safety.
comment:
  v: Contained resources do not have narrative. Resources that are not contained SHOULD have a narrative. In some cases, a resource may only have text with little or no additional discrete data (as long as all minOccurs=1 elements are satisfied). This may be necessary for data from legacy systems where information is captured as a "text blob" or where text is additionally entered raw or narrated and encoded information is added later.
alias:
  v: narrative
alias:
  v: html
alias:
  v: xhtml
alias:
  v: display
min:
  v: 0
max:
  v: 1
base:
  path:
    v: DomainResource.text
  min:
    v: 0
  max:
    v: 1
type:
  code:
    v: Narrative
constraint:
  key:
    v: ele-1
  severity:
    v: error
  human:
    v: All FHIR elements must have a @value or children
  expression:
    v: hasValue() or (children().count() > id.count())
  xpath:
    v: @value|f:*|h:div
  source:
    v: http://hl7.org/fhir/StructureDefinition/Element
    link: http://hl7.org/fhir/StructureDefinition/Element
is modifier:
  v: false
is summary:
  v: false
mapping:
  identity:
    v: rim
  map:
    v: Act.text?

id:
  v: Specimen.contained
path:
  v: Specimen.contained
short:
  v: Contained, inline Resources
definition:
  v: These resources do not have an independent existence apart from the resource that contains them - they cannot be identified independently, and nor can they have their own independent transaction scope.
comment:
  v: This should never be done when the content can be identified properly, as once identification is lost, it is extremely difficult (and context dependent) to restore it again. Contained resources may have profiles and tags In their meta elements, but SHALL NOT have security labels.
alias:
  v: inline resources
alias:
  v: anonymous resources
alias:
  v: contained resources
min:
  v: 0
max:
  v: *
base:
  path:
    v: DomainResource.contained
  min:
    v: 0
  max:
    v: *
type:
  code:
    v: Resource
is modifier:
  v: false
is summary:
  v: false
mapping:
  identity:
    v: rim
  map:
    v: N/A

id:
  v: Specimen.extension
path:
  v: Specimen.extension
slicing:
  discriminator:
    type:
      v: value
    path:
      v: url
  ordered:
    v: false
  rules:
    v: open
short:
  v: Extension
definition:
  v: An Extension
min:
  v: 1
max:
  v: *
base:
  path:
    v: DomainResource.extension
  min:
    v: 0
  max:
    v: *
type:
  code:
    v: Extension
constraint:
  key:
    v: ele-1
  severity:
    v: error
  human:
    v: All FHIR elements must have a @value or children
  expression:
    v: hasValue() or (children().count() > id.count())
  xpath:
    v: @value|f:*|h:div
  source:
    v: http://hl7.org/fhir/StructureDefinition/Element
    link: http://hl7.org/fhir/StructureDefinition/Element
constraint:
  key:
    v: ext-1
  severity:
    v: error
  human:
    v: Must have either extensions or value[x], not both
  expression:
    v: extension.exists() != value.exists()
  xpath:
    v: exists(f:extension)!=exists(f:*[starts-with(local-name(.), "value")])
  source:
    v: http://hl7.org/fhir/StructureDefinition/Extension
    link: http://hl7.org/fhir/StructureDefinition/Extension
is modifier:
  v: false
is summary:
  v: false

id:
  v: Specimen.extension:BiologicalSampleOrigin
path:
  v: Specimen.extension
slice name:
  v: BiologicalSampleOrigin
short:
  v: The origin of the sample
definition:
  v: Allows you to indicate the origin of the sample.
min:
  v: 1
max:
  v: 1
base:
  path:
    v: DomainResource.extension
  min:
    v: 0
  max:
    v: *
type:
  code:
    v: Extension
  profile:
    v: https://ig-osiris.cancer.fr/ig/osiris/StructureDefinition/BiologicalSampleOrigin
    link: https://ig-osiris.cancer.fr/ig/osiris/StructureDefinition/BiologicalSampleOrigin
condition:
  v: ele-1
constraint:
  key:
    v: ele-1
  severity:
    v: error
  human:
    v: All FHIR elements must have a @value or children
  expression:
    v: hasValue() or (children().count() > id.count())
  xpath:
    v: @value|f:*|h:div
  source:
    v: http://hl7.org/fhir/StructureDefinition/Element
    link: http://hl7.org/fhir/StructureDefinition/Element
constraint:
  key:
    v: ext-1
  severity:
    v: error
  human:
    v: Must have either extensions or value[x], not both
  expression:
    v: extension.exists() != value.exists()
  xpath:
    v: exists(f:extension)!=exists(f:*[starts-with(local-name(.), 'value')])
  source:
    v: http://hl7.org/fhir/StructureDefinition/Extension
    link: http://hl7.org/fhir/StructureDefinition/Extension
must support:
  v: true
is modifier:
  v: false

id:
  v: Specimen.extension:BiologicalSampleOrigin.id
path:
  v: Specimen.extension.id
representation:
  v: xmlAttr
short:
  v: Unique id for inter-element referencing
definition:
  v: Unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces.
min:
  v: 0
max:
  v: 1
base:
  path:
    v: Element.id
  min:
    v: 0
  max:
    v: 1
type:
  extension:
    url:
      v: http://hl7.org/fhir/StructureDefinition/structuredefinition-fhir-type
    value: url
      v: string
  code:
    v: http://hl7.org/fhirpath/System.String
is modifier:
  v: false
is summary:
  v: false
mapping:
  identity:
    v: rim
  map:
    v: n/a

id:
  v: Specimen.extension:BiologicalSampleOrigin.extension
path:
  v: Specimen.extension.extension
slicing:
  discriminator:
    type:
      v: value
    path:
      v: url
  description:
    v: Extensions are always sliced by (at least) url
  rules:
    v: open
short:
  v: Extension
definition:
  v: An Extension
min:
  v: 0
max:
  v: 0
base:
  path:
    v: Element.extension
  min:
    v: 0
  max:
    v: *
type:
  code:
    v: Extension
constraint:
  key:
    v: ele-1
  severity:
    v: error
  human:
    v: All FHIR elements must have a @value or children
  expression:
    v: hasValue() or (children().count() > id.count())
  xpath:
    v: @value|f:*|h:div
  source:
    v: http://hl7.org/fhir/StructureDefinition/Element
    link: http://hl7.org/fhir/StructureDefinition/Element
constraint:
  key:
    v: ext-1
  severity:
    v: error
  human:
    v: Must have either extensions or value[x], not both
  expression:
    v: extension.exists() != value.exists()
  xpath:
    v: exists(f:extension)!=exists(f:*[starts-with(local-name(.), "value")])
  source:
    v: http://hl7.org/fhir/StructureDefinition/Extension
    link: http://hl7.org/fhir/StructureDefinition/Extension
is modifier:
  v: false
is summary:
  v: false

id:
  v: Specimen.extension:BiologicalSampleOrigin.url
path:
  v: Specimen.extension.url
representation:
  v: xmlAttr
short:
  v: identifies the meaning of the extension
definition:
  v: Source of the definition for the extension code - a logical name or a URL.
comment:
  v: The definition may point directly to a computable or human-readable definition of the extensibility codes, or it may be a logical URI as declared in some other specification. The definition SHALL be a URI for the Structure Definition defining the extension.
min:
  v: 1
max:
  v: 1
base:
  path:
    v: Extension.url
  min:
    v: 1
  max:
    v: 1
type:
  extension:
    url:
      v: http://hl7.org/fhir/StructureDefinition/structuredefinition-fhir-type
    value: url
      v: uri
  code:
    v: http://hl7.org/fhirpath/System.String
fixed: uri
  v: https://ig-osiris.cancer.fr/ig/osiris/StructureDefinition/BiologicalSampleOrigin
is modifier:
  v: false
is summary:
  v: false
mapping:
  identity:
    v: rim
  map:
    v: N/A

id:
  v: Specimen.extension:BiologicalSampleOrigin.value[x]
path:
  v: Specimen.extension.value[x]
slicing:
  discriminator:
    type:
      v: type
    path:
      v: $this
  ordered:
    v: false
  rules:
    v: closed
short:
  v: Value of extension
definition:
  v: Value of extension - must be one of a constrained set of the data types (see [Extensibility](http://hl7.org/fhir/R4/extensibility.html) for a list).
min:
  v: 1
max:
  v: 1
base:
  path:
    v: Extension.value[x]
  min:
    v: 0
  max:
    v: 1
type:
  code:
    v: CodeableConcept
constraint:
  key:
    v: ele-1
  severity:
    v: error
  human:
    v: All FHIR elements must have a @value or children
  expression:
    v: hasValue() or (children().count() > id.count())
  xpath:
    v: @value|f:*|h:div
  source:
    v: http://hl7.org/fhir/StructureDefinition/Element
    link: http://hl7.org/fhir/StructureDefinition/Element
is modifier:
  v: false
is summary:
  v: false
mapping:
  identity:
    v: rim
  map:
    v: N/A

id:
  v: Specimen.extension:BiologicalSampleOrigin.value[x]:valueCodeableConcept
path:
  v: Specimen.extension.value[x]
slice name:
  v: valueCodeableConcept
short:
  v: The origin of the sample
definition:
  v: Allows you to indicate the origin of the sample.
min:
  v: 1
max:
  v: 1
base:
  path:
    v: Extension.value[x]
  min:
    v: 0
  max:
    v: 1
type:
  code:
    v: CodeableConcept
constraint:
  key:
    v: ele-1
  severity:
    v: error
  human:
    v: All FHIR elements must have a @value or children
  expression:
    v: hasValue() or (children().count() > id.count())
  xpath:
    v: @value|f:*|h:div
  source:
    v: http://hl7.org/fhir/StructureDefinition/Element
    link: http://hl7.org/fhir/StructureDefinition/Element
must support:
  v: true
is modifier:
  v: false
is summary:
  v: false
binding:
  strength:
    v: extensible
  value set:
    v: https://ig-osiris.cancer.fr/ig/osiris/ValueSet/BiologicalSampleOrigin
    link: https://ig-osiris.cancer.fr/ig/osiris/ValueSet/BiologicalSampleOrigin
mapping:
  identity:
    v: fhir-osiris
  map:
    v: OSIRIS_pivot_BiologicalSample.BiologicalSample_Origin
mapping:
  identity:
    v: rim
  map:
    v: N/A

id:
  v: Specimen.extension:BiologicalSampleOrigin.value[x]:valueCodeableConcept.id
path:
  v: Specimen.extension.value[x].id
representation:
  v: xmlAttr
short:
  v: Unique id for inter-element referencing
definition:
  v: Unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces.
min:
  v: 0
max:
  v: 1
base:
  path:
    v: Element.id
  min:
    v: 0
  max:
    v: 1
type:
  extension:
    url:
      v: http://hl7.org/fhir/StructureDefinition/structuredefinition-fhir-type
    value: url
      v: string
  code:
    v: http://hl7.org/fhirpath/System.String
is modifier:
  v: false
is summary:
  v: false
mapping:
  identity:
    v: rim
  map:
    v: n/a

id:
  v: Specimen.extension:BiologicalSampleOrigin.value[x]:valueCodeableConcept.extension
path:
  v: Specimen.extension.value[x].extension
slicing:
  discriminator:
    type:
      v: value
    path:
      v: url
  description:
    v: Extensions are always sliced by (at least) url
  rules:
    v: open
short:
  v: Additional content defined by implementations
definition:
  v: May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.
comment:
  v: There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.
alias:
  v: extensions
alias:
  v: user content
min:
  v: 0
max:
  v: *
base:
  path:
    v: Element.extension
  min:
    v: 0
  max:
    v: *
type:
  code:
    v: Extension
constraint:
  key:
    v: ele-1
  severity:
    v: error
  human:
    v: All FHIR elements must have a @value or children
  expression:
    v: hasValue() or (children().count() > id.count())
  xpath:
    v: @value|f:*|h:div
  source:
    v: http://hl7.org/fhir/StructureDefinition/Element
    link: http://hl7.org/fhir/StructureDefinition/Element
constraint:
  key:
    v: ext-1
  severity:
    v: error
  human:
    v: Must have either extensions or value[x], not both
  expression:
    v: extension.exists() != value.exists()
  xpath:
    v: exists(f:extension)!=exists(f:*[starts-with(local-name(.), "value")])
  source:
    v: http://hl7.org/fhir/StructureDefinition/Extension
    link: http://hl7.org/fhir/StructureDefinition/Extension
is modifier:
  v: false
is summary:
  v: false
mapping:
  identity:
    v: rim
  map:
    v: n/a

id:
  v: Specimen.extension:BiologicalSampleOrigin.value[x]:valueCodeableConcept.coding
path:
  v: Specimen.extension.value[x].coding
short:
  v: Code defined by a terminology system
definition:
  v: A reference to a code defined by a terminology system.
comment:
  v: Codes may be defined very casually in enumerations, or code lists, up to very formal definitions such as SNOMED CT - see the HL7 v3 Core Principles for more information. Ordering of codings is undefined and SHALL NOT be used to infer meaning. Generally, at most only one of the coding values will be labeled as UserSelected = true.
requirements:
  v: Allows for alternative encodings within a code system, and translations to other code systems.
min:
  v: 0
max:
  v: *
base:
  path:
    v: CodeableConcept.coding
  min:
    v: 0
  max:
    v: *
type:
  code:
    v: Coding
constraint:
  key:
    v: ele-1
  severity:
    v: error
  human:
    v: All FHIR elements must have a @value or children
  expression:
    v: hasValue() or (children().count() > id.count())
  xpath:
    v: @value|f:*|h:div
  source:
    v: http://hl7.org/fhir/StructureDefinition/Element
    link: http://hl7.org/fhir/StructureDefinition/Element
is modifier:
  v: false
is summary:
  v: true
mapping:
  identity:
    v: v2
  map:
    v: C*E.1-8, C*E.10-22
mapping:
  identity:
    v: rim
  map:
    v: union(., ./translation)
mapping:
  identity:
    v: orim
  map:
    v: fhir:CodeableConcept.coding rdfs:subPropertyOf dt:CD.coding

id:
  v: Specimen.extension:BiologicalSampleOrigin.value[x]:valueCodeableConcept.text
extension:
  url:
    v: http://hl7.org/fhir/StructureDefinition/elementdefinition-translatable
  value: boolean
    v: true
path:
  v: Specimen.extension.value[x].text
short:
  v: Plain text representation of the concept
definition:
  v: A human language representation of the concept as seen/selected/uttered by the user who entered the data and/or which represents the intended meaning of the user.
comment:
  v: Very often the text is the same as a displayName of one of the codings.
requirements:
  v: The codes from the terminologies do not always capture the correct meaning with all the nuances of the human using them, or sometimes there is no appropriate code at all. In these cases, the text is used to capture the full meaning of the source.
min:
  v: 0
max:
  v: 1
base:
  path:
    v: CodeableConcept.text
  min:
    v: 0
  max:
    v: 1
type:
  code:
    v: string
pattern: string
  v: Origin of the sample
constraint:
  key:
    v: ele-1
  severity:
    v: error
  human:
    v: All FHIR elements must have a @value or children
  expression:
    v: hasValue() or (children().count() > id.count())
  xpath:
    v: @value|f:*|h:div
  source:
    v: http://hl7.org/fhir/StructureDefinition/Element
    link: http://hl7.org/fhir/StructureDefinition/Element
is modifier:
  v: false
is summary:
  v: true
mapping:
  identity:
    v: v2
  map:
    v: C*E.9. But note many systems use C*E.2 for this
mapping:
  identity:
    v: rim
  map:
    v: ./originalText[mediaType/code="text/plain"]/data
mapping:
  identity:
    v: orim
  map:
    v: fhir:CodeableConcept.text rdfs:subPropertyOf dt:CD.originalText

id:
  v: Specimen.extension:BasedOnCondition
path:
  v: Specimen.extension
slice name:
  v: BasedOnCondition
short:
  v: Tumur Pathology Event concerned by the sample
definition:
  v: Tumur Pathology Event concerned by the sample.
min:
  v: 0
max:
  v: 1
base:
  path:
    v: DomainResource.extension
  min:
    v: 0
  max:
    v: *
type:
  code:
    v: Extension
  profile:
    v: https://ig-osiris.cancer.fr/ig/osiris/StructureDefinition/BasedOnCondition
    link: https://ig-osiris.cancer.fr/ig/osiris/StructureDefinition/BasedOnCondition
condition:
  v: ele-1
constraint:
  key:
    v: ele-1
  severity:
    v: error
  human:
    v: All FHIR elements must have a @value or children
  expression:
    v: hasValue() or (children().count() > id.count())
  xpath:
    v: @value|f:*|h:div
  source:
    v: http://hl7.org/fhir/StructureDefinition/Element
    link: http://hl7.org/fhir/StructureDefinition/Element
constraint:
  key:
    v: ext-1
  severity:
    v: error
  human:
    v: Must have either extensions or value[x], not both
  expression:
    v: extension.exists() != value.exists()
  xpath:
    v: exists(f:extension)!=exists(f:*[starts-with(local-name(.), 'value')])
  source:
    v: http://hl7.org/fhir/StructureDefinition/Extension
    link: http://hl7.org/fhir/StructureDefinition/Extension
must support:
  v: true
is modifier:
  v: false

id:
  v: Specimen.extension:BasedOnCondition.id
path:
  v: Specimen.extension.id
representation:
  v: xmlAttr
short:
  v: Unique id for inter-element referencing
definition:
  v: Unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces.
min:
  v: 0
max:
  v: 1
base:
  path:
    v: Element.id
  min:
    v: 0
  max:
    v: 1
type:
  extension:
    url:
      v: http://hl7.org/fhir/StructureDefinition/structuredefinition-fhir-type
    value: url
      v: string
  code:
    v: http://hl7.org/fhirpath/System.String
is modifier:
  v: false
is summary:
  v: false
mapping:
  identity:
    v: rim
  map:
    v: n/a

id:
  v: Specimen.extension:BasedOnCondition.extension
path:
  v: Specimen.extension.extension
slicing:
  discriminator:
    type:
      v: value
    path:
      v: url
  description:
    v: Extensions are always sliced by (at least) url
  rules:
    v: open
short:
  v: Extension
definition:
  v: An Extension
min:
  v: 0
max:
  v: 0
base:
  path:
    v: Element.extension
  min:
    v: 0
  max:
    v: *
type:
  code:
    v: Extension
constraint:
  key:
    v: ele-1
  severity:
    v: error
  human:
    v: All FHIR elements must have a @value or children
  expression:
    v: hasValue() or (children().count() > id.count())
  xpath:
    v: @value|f:*|h:div
  source:
    v: http://hl7.org/fhir/StructureDefinition/Element
    link: http://hl7.org/fhir/StructureDefinition/Element
constraint:
  key:
    v: ext-1
  severity:
    v: error
  human:
    v: Must have either extensions or value[x], not both
  expression:
    v: extension.exists() != value.exists()
  xpath:
    v: exists(f:extension)!=exists(f:*[starts-with(local-name(.), "value")])
  source:
    v: http://hl7.org/fhir/StructureDefinition/Extension
    link: http://hl7.org/fhir/StructureDefinition/Extension
is modifier:
  v: false
is summary:
  v: false

id:
  v: Specimen.extension:BasedOnCondition.url
path:
  v: Specimen.extension.url
representation:
  v: xmlAttr
short:
  v: identifies the meaning of the extension
definition:
  v: Source of the definition for the extension code - a logical name or a URL.
comment:
  v: The definition may point directly to a computable or human-readable definition of the extensibility codes, or it may be a logical URI as declared in some other specification. The definition SHALL be a URI for the Structure Definition defining the extension.
min:
  v: 1
max:
  v: 1
base:
  path:
    v: Extension.url
  min:
    v: 1
  max:
    v: 1
type:
  extension:
    url:
      v: http://hl7.org/fhir/StructureDefinition/structuredefinition-fhir-type
    value: url
      v: uri
  code:
    v: http://hl7.org/fhirpath/System.String
fixed: uri
  v: https://ig-osiris.cancer.fr/ig/osiris/StructureDefinition/BasedOnCondition
is modifier:
  v: false
is summary:
  v: false
mapping:
  identity:
    v: rim
  map:
    v: N/A

id:
  v: Specimen.extension:BasedOnCondition.value[x]
path:
  v: Specimen.extension.value[x]
slicing:
  discriminator:
    type:
      v: type
    path:
      v: $this
  ordered:
    v: false
  rules:
    v: closed
short:
  v: Value of extension
definition:
  v: Value of extension - must be one of a constrained set of the data types (see [Extensibility](http://hl7.org/fhir/R4/extensibility.html) for a list).
min:
  v: 0
max:
  v: 1
base:
  path:
    v: Extension.value[x]
  min:
    v: 0
  max:
    v: 1
type:
  code:
    v: Reference
constraint:
  key:
    v: ele-1
  severity:
    v: error
  human:
    v: All FHIR elements must have a @value or children
  expression:
    v: hasValue() or (children().count() > id.count())
  xpath:
    v: @value|f:*|h:div
  source:
    v: http://hl7.org/fhir/StructureDefinition/Element
    link: http://hl7.org/fhir/StructureDefinition/Element
is modifier:
  v: false
is summary:
  v: false
mapping:
  identity:
    v: rim
  map:
    v: N/A

id:
  v: Specimen.extension:BasedOnCondition.value[x]:valueReference
path:
  v: Specimen.extension.value[x]
slice name:
  v: valueReference
short:
  v: Value of extension
definition:
  v: Value of extension - must be one of a constrained set of the data types (see [Extensibility](http://hl7.org/fhir/R4/extensibility.html) for a list).
min:
  v: 0
max:
  v: 1
base:
  path:
    v: Extension.value[x]
  min:
    v: 0
  max:
    v: 1
type:
  code:
    v: Reference
  target profile:
    v: https://ig-osiris.cancer.fr/ig/osiris/StructureDefinition/tumor-pathology-event
    link: https://ig-osiris.cancer.fr/ig/osiris/StructureDefinition/tumor-pathology-event
constraint:
  key:
    v: ele-1
  severity:
    v: error
  human:
    v: All FHIR elements must have a @value or children
  expression:
    v: hasValue() or (children().count() > id.count())
  xpath:
    v: @value|f:*|h:div
  source:
    v: http://hl7.org/fhir/StructureDefinition/Element
    link: http://hl7.org/fhir/StructureDefinition/Element
must support:
  v: true
is modifier:
  v: false
is summary:
  v: false
mapping:
  identity:
    v: fhir-osiris
  map:
    v: OSIRIS_pivot_BiologicalSample.TumorPathologyEvent_Ref
mapping:
  identity:
    v: rim
  map:
    v: N/A

id:
  v: Specimen.modifierExtension
path:
  v: Specimen.modifierExtension
short:
  v: Extensions that cannot be ignored
definition:
  v: May be used to represent additional information that is not part of the basic definition of the resource and that modifies the understanding of the element that contains it and/or the understanding of the containing element's descendants. Usually modifier elements provide negation or qualification. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer is allowed to define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. Applications processing a resource are required to check for modifier extensions. Modifier extensions SHALL NOT change the meaning of any elements on Resource or DomainResource (including cannot change the meaning of modifierExtension itself).
comment:
  v: There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.
requirements:
  v: Modifier extensions allow for extensions that *cannot* be safely ignored to be clearly distinguished from the vast majority of extensions which can be safely ignored. This promotes interoperability by eliminating the need for implementers to prohibit the presence of extensions. For further information, see the [definition of modifier extensions](http://hl7.org/fhir/R4/extensibility.html#modifierExtension).
alias:
  v: extensions
alias:
  v: user content
min:
  v: 0
max:
  v: *
base:
  path:
    v: DomainResource.modifierExtension
  min:
    v: 0
  max:
    v: *
type:
  code:
    v: Extension
constraint:
  key:
    v: ele-1
  severity:
    v: error
  human:
    v: All FHIR elements must have a @value or children
  expression:
    v: hasValue() or (children().count() > id.count())
  xpath:
    v: @value|f:*|h:div
  source:
    v: http://hl7.org/fhir/StructureDefinition/Element
    link: http://hl7.org/fhir/StructureDefinition/Element
constraint:
  key:
    v: ext-1
  severity:
    v: error
  human:
    v: Must have either extensions or value[x], not both
  expression:
    v: extension.exists() != value.exists()
  xpath:
    v: exists(f:extension)!=exists(f:*[starts-with(local-name(.), "value")])
  source:
    v: http://hl7.org/fhir/StructureDefinition/Extension
    link: http://hl7.org/fhir/StructureDefinition/Extension
is modifier:
  v: true
is modifier reason:
  v: Modifier extensions are expected to modify the meaning or interpretation of the resource that contains them
is summary:
  v: false
mapping:
  identity:
    v: rim
  map:
    v: N/A

id:
  v: Specimen.identifier
path:
  v: Specimen.identifier
short:
  v: Identifier of the biological sample
definition:
  v: Unique identifier of the sample within the health center (barcode, text identifier).
min:
  v: 1
max:
  v: 1
base:
  path:
    v: Specimen.identifier
  min:
    v: 0
  max:
    v: *
type:
  code:
    v: Identifier
constraint:
  key:
    v: ele-1
  severity:
    v: error
  human:
    v: All FHIR elements must have a @value or children
  expression:
    v: hasValue() or (children().count() > id.count())
  xpath:
    v: @value|f:*|h:div
  source:
    v: http://hl7.org/fhir/StructureDefinition/Element
    link: http://hl7.org/fhir/StructureDefinition/Element
must support:
  v: true
is modifier:
  v: false
is summary:
  v: true
mapping:
  identity:
    v: fhir-osiris
  map:
    v: OSIRIS_pivot_BiologicalSample.BiologicalSample_ExternalAccession
mapping:
  identity:
    v: w5
  map:
    v: FiveWs.identifier
mapping:
  identity:
    v: v2
  map:
    v: SPM-2
mapping:
  identity:
    v: rim
  map:
    v: .id

id:
  v: Specimen.accessionIdentifier
path:
  v: Specimen.accessionIdentifier
short:
  v: Identifier assigned by the lab
definition:
  v: The identifier assigned by the lab when accessioning specimen(s). This is not necessarily the same as the specimen identifier, depending on local lab procedures.
min:
  v: 0
max:
  v: 1
base:
  path:
    v: Specimen.accessionIdentifier
  min:
    v: 0
  max:
    v: 1
type:
  code:
    v: Identifier
constraint:
  key:
    v: ele-1
  severity:
    v: error
  human:
    v: All FHIR elements must have a @value or children
  expression:
    v: hasValue() or (children().count() > id.count())
  xpath:
    v: @value|f:*|h:div
  source:
    v: http://hl7.org/fhir/StructureDefinition/Element
    link: http://hl7.org/fhir/StructureDefinition/Element
is modifier:
  v: false
is summary:
  v: true
mapping:
  identity:
    v: w5
  map:
    v: FiveWs.identifier
mapping:
  identity:
    v: v2
  map:
    v: SPM-30 (v2.7+)
mapping:
  identity:
    v: rim
  map:
    v: .participation[typeCode=SBJ].act[classCode=ACSN, moodCode=EVN].id

id:
  v: Specimen.status
path:
  v: Specimen.status
short:
  v: available | unavailable | unsatisfactory | entered-in-error
definition:
  v: The availability of the specimen.
comment:
  v: This element is labeled as a modifier because the status contains codes that mark the resource as not currently valid.
min:
  v: 0
max:
  v: 1
base:
  path:
    v: Specimen.status
  min:
    v: 0
  max:
    v: 1
type:
  code:
    v: code
constraint:
  key:
    v: ele-1
  severity:
    v: error
  human:
    v: All FHIR elements must have a @value or children
  expression:
    v: hasValue() or (children().count() > id.count())
  xpath:
    v: @value|f:*|h:div
  source:
    v: http://hl7.org/fhir/StructureDefinition/Element
    link: http://hl7.org/fhir/StructureDefinition/Element
is modifier:
  v: true
is modifier reason:
  v: This element is labelled as a modifier because it is a status element that contains status entered-in-error which means that the resource should not be treated as valid
is summary:
  v: true
binding:
  extension:
    url:
      v: http://hl7.org/fhir/StructureDefinition/elementdefinition-bindingName
    value: string
      v: SpecimenStatus
  strength:
    v: required
  description:
    v: Codes providing the status/availability of a specimen.
  value set:
    v: http://hl7.org/fhir/ValueSet/specimen-status|4.0.1
    link: 4.0
    link: .1
mapping:
  identity:
    v: w5
  map:
    v: FiveWs.status
mapping:
  identity:
    v: v2
  map:
    v: SPM-20
mapping:
  identity:
    v: rim
  map:
    v: status

id:
  v: Specimen.type
path:
  v: Specimen.type
short:
  v: The nature of the sample
definition:
  v: Information indicating the nature of the sample.
comment:
  v: The type can change the way that a specimen is handled and drives what kind of analyses can properly be performed on the specimen. It is frequently used in diagnostic work flow decision making systems.
min:
  v: 1
max:
  v: 1
base:
  path:
    v: Specimen.type
  min:
    v: 0
  max:
    v: 1
type:
  code:
    v: CodeableConcept
constraint:
  key:
    v: ele-1
  severity:
    v: error
  human:
    v: All FHIR elements must have a @value or children
  expression:
    v: hasValue() or (children().count() > id.count())
  xpath:
    v: @value|f:*|h:div
  source:
    v: http://hl7.org/fhir/StructureDefinition/Element
    link: http://hl7.org/fhir/StructureDefinition/Element
must support:
  v: true
is modifier:
  v: false
is summary:
  v: true
binding:
  strength:
    v: preferred
  value set:
    v: https://ig-osiris.cancer.fr/ig/osiris/ValueSet/BiologicalSampleNature
    link: https://ig-osiris.cancer.fr/ig/osiris/ValueSet/BiologicalSampleNature
mapping:
  identity:
    v: fhir-osiris
  map:
    v: OSIRIS_pivot_BiologicalSample.BiologicalSample_Nature
mapping:
  identity:
    v: w5
  map:
    v: FiveWs.what[x]
mapping:
  identity:
    v: v2
  map:
    v: SPM-4 and possibly SPM-5
mapping:
  identity:
    v: rim
  map:
    v: .code

id:
  v: Specimen.subject
path:
  v: Specimen.subject
short:
  v: Where the specimen came from. This may be from patient(s), from a location (e.g., the source of an environmental sample), or a sampling of a substance or a device
definition:
  v: Where the specimen came from. This may be from patient(s), from a location (e.g., the source of an environmental sample), or a sampling of a substance or a device.
requirements:
  v: Must know the subject context.
min:
  v: 0
max:
  v: 1
base:
  path:
    v: Specimen.subject
  min:
    v: 0
  max:
    v: 1
type:
  code:
    v: Reference
  target profile:
    v: https://ig-osiris.cancer.fr/ig/osiris/StructureDefinition/onco-patient
    link: https://ig-osiris.cancer.fr/ig/osiris/StructureDefinition/onco-patient
constraint:
  key:
    v: ele-1
  severity:
    v: error
  human:
    v: All FHIR elements must have a @value or children
  expression:
    v: hasValue() or (children().count() > id.count())
  xpath:
    v: @value|f:*|h:div
  source:
    v: http://hl7.org/fhir/StructureDefinition/Element
    link: http://hl7.org/fhir/StructureDefinition/Element
must support:
  v: true
is modifier:
  v: false
is summary:
  v: true
mapping:
  identity:
    v: fhir-osiris
  map:
    v: OSIRIS_pivot_BiologicalSample.Patient_Id
mapping:
  identity:
    v: w5
  map:
    v: FiveWs.subject[x]
mapping:
  identity:
    v: rim
  map:
    v: .scoper or .scoper.playsRole
mapping:
  identity:
    v: w5
  map:
    v: FiveWs.subject

id:
  v: Specimen.receivedTime
path:
  v: Specimen.receivedTime
short:
  v: The time when specimen was received for processing
definition:
  v: Time when specimen was received for processing or testing.
min:
  v: 0
max:
  v: 1
base:
  path:
    v: Specimen.receivedTime
  min:
    v: 0
  max:
    v: 1
type:
  code:
    v: dateTime
constraint:
  key:
    v: ele-1
  severity:
    v: error
  human:
    v: All FHIR elements must have a @value or children
  expression:
    v: hasValue() or (children().count() > id.count())
  xpath:
    v: @value|f:*|h:div
  source:
    v: http://hl7.org/fhir/StructureDefinition/Element
    link: http://hl7.org/fhir/StructureDefinition/Element
is modifier:
  v: false
is summary:
  v: true
mapping:
  identity:
    v: w5
  map:
    v: FiveWs.done[x]
mapping:
  identity:
    v: v2
  map:
    v: SPM-18
mapping:
  identity:
    v: rim
  map:
    v: .participation[typeCode=SBJ].act[code=SPCREC, moodCode=EVN].effectiveTime

id:
  v: Specimen.parent
path:
  v: Specimen.parent
short:
  v: Identifier of the parent biological sample
definition:
  v: Unique identifier of the parent sample (barcode, text identifier). For example, an aliquot or a sample extracted from another sample (e.g. histological number).
comment:
  v: The parent specimen could be the source from which the current specimen is derived by some processing step (e.g. an aliquot or isolate or extracted nucleic acids from clinical samples) or one of many specimens that were combined to create a pooled sample.
min:
  v: 0
max:
  v: 1
base:
  path:
    v: Specimen.parent
  min:
    v: 0
  max:
    v: *
type:
  code:
    v: Reference
  target profile:
    v: https://ig-osiris.cancer.fr/ig/osiris/StructureDefinition/onco-biological-sample
    link: https://ig-osiris.cancer.fr/ig/osiris/StructureDefinition/onco-biological-sample
constraint:
  key:
    v: ele-1
  severity:
    v: error
  human:
    v: All FHIR elements must have a @value or children
  expression:
    v: hasValue() or (children().count() > id.count())
  xpath:
    v: @value|f:*|h:div
  source:
    v: http://hl7.org/fhir/StructureDefinition/Element
    link: http://hl7.org/fhir/StructureDefinition/Element
must support:
  v: true
is modifier:
  v: false
is summary:
  v: false
mapping:
  identity:
    v: fhir-osiris
  map:
    v: OSIRIS_pivot_BiologicalSample.BiologicalSample_ParentExternalAccession
mapping:
  identity:
    v: rim
  map:
    v: .scoper (if parent) .player.scopesRole[classCode=SPEC].player (if child)

id:
  v: Specimen.request
path:
  v: Specimen.request
short:
  v: Why the specimen was collected
definition:
  v: Details concerning a service request that required a specimen to be collected.
comment:
  v: The request may be explicit or implied such with a ServiceRequest that requires a blood draw.
min:
  v: 0
max:
  v: *
base:
  path:
    v: Specimen.request
  min:
    v: 0
  max:
    v: *
type:
  code:
    v: Reference
  target profile:
    v: http://hl7.org/fhir/StructureDefinition/ServiceRequest
    link: http://hl7.org/fhir/StructureDefinition/ServiceRequest
constraint:
  key:
    v: ele-1
  severity:
    v: error
  human:
    v: All FHIR elements must have a @value or children
  expression:
    v: hasValue() or (children().count() > id.count())
  xpath:
    v: @value|f:*|h:div
  source:
    v: http://hl7.org/fhir/StructureDefinition/Element
    link: http://hl7.org/fhir/StructureDefinition/Element
is modifier:
  v: false
is summary:
  v: false
mapping:
  identity:
    v: w5
  map:
    v: FiveWs.why[x]
mapping:
  identity:
    v: v2
  map:
    v: ORC? OBR-2/3?
mapping:
  identity:
    v: rim
  map:
    v: outboundRelationship[typeCode=FLFS].target

id:
  v: Specimen.collection
path:
  v: Specimen.collection
short:
  v: Collection details
definition:
  v: Details concerning the specimen collection.
min:
  v: 0
max:
  v: 1
base:
  path:
    v: Specimen.collection
  min:
    v: 0
  max:
    v: 1
type:
  code:
    v: BackboneElement
constraint:
  key:
    v: ele-1
  severity:
    v: error
  human:
    v: All FHIR elements must have a @value or children
  expression:
    v: hasValue() or (children().count() > id.count())
  xpath:
    v: @value|f:*|h:div
  source:
    v: http://hl7.org/fhir/StructureDefinition/Element
    link: http://hl7.org/fhir/StructureDefinition/Element
is modifier:
  v: false
is summary:
  v: false
mapping:
  identity:
    v: v2
  map:
    v: SPM-14
mapping:
  identity:
    v: rim
  map:
    v: .participation[typeCode=SBJ].act[classCode=SPECCOLLECT, moodCode=EVN]

id:
  v: Specimen.collection.id
path:
  v: Specimen.collection.id
representation:
  v: xmlAttr
short:
  v: Unique id for inter-element referencing
definition:
  v: Unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces.
min:
  v: 0
max:
  v: 1
base:
  path:
    v: Element.id
  min:
    v: 0
  max:
    v: 1
type:
  extension:
    url:
      v: http://hl7.org/fhir/StructureDefinition/structuredefinition-fhir-type
    value: url
      v: string
  code:
    v: http://hl7.org/fhirpath/System.String
is modifier:
  v: false
is summary:
  v: false
mapping:
  identity:
    v: rim
  map:
    v: n/a

id:
  v: Specimen.collection.extension
path:
  v: Specimen.collection.extension
short:
  v: Additional content defined by implementations
definition:
  v: May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.
comment:
  v: There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.
alias:
  v: extensions
alias:
  v: user content
min:
  v: 0
max:
  v: *
base:
  path:
    v: Element.extension
  min:
    v: 0
  max:
    v: *
type:
  code:
    v: Extension
constraint:
  key:
    v: ele-1
  severity:
    v: error
  human:
    v: All FHIR elements must have a @value or children
  expression:
    v: hasValue() or (children().count() > id.count())
  xpath:
    v: @value|f:*|h:div
  source:
    v: http://hl7.org/fhir/StructureDefinition/Element
    link: http://hl7.org/fhir/StructureDefinition/Element
constraint:
  key:
    v: ext-1
  severity:
    v: error
  human:
    v: Must have either extensions or value[x], not both
  expression:
    v: extension.exists() != value.exists()
  xpath:
    v: exists(f:extension)!=exists(f:*[starts-with(local-name(.), "value")])
  source:
    v: http://hl7.org/fhir/StructureDefinition/Extension
    link: http://hl7.org/fhir/StructureDefinition/Extension
is modifier:
  v: false
is summary:
  v: false
mapping:
  identity:
    v: rim
  map:
    v: n/a

id:
  v: Specimen.collection.modifierExtension
path:
  v: Specimen.collection.modifierExtension
short:
  v: Extensions that cannot be ignored even if unrecognized
definition:
  v: May be used to represent additional information that is not part of the basic definition of the element and that modifies the understanding of the element in which it is contained and/or the understanding of the containing element's descendants. Usually modifier elements provide negation or qualification. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. Applications processing a resource are required to check for modifier extensions. Modifier extensions SHALL NOT change the meaning of any elements on Resource or DomainResource (including cannot change the meaning of modifierExtension itself).
comment:
  v: There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.
requirements:
  v: Modifier extensions allow for extensions that *cannot* be safely ignored to be clearly distinguished from the vast majority of extensions which can be safely ignored. This promotes interoperability by eliminating the need for implementers to prohibit the presence of extensions. For further information, see the [definition of modifier extensions](http://hl7.org/fhir/R4/extensibility.html#modifierExtension).
alias:
  v: extensions
alias:
  v: user content
alias:
  v: modifiers
min:
  v: 0
max:
  v: *
base:
  path:
    v: BackboneElement.modifierExtension
  min:
    v: 0
  max:
    v: *
type:
  code:
    v: Extension
constraint:
  key:
    v: ele-1
  severity:
    v: error
  human:
    v: All FHIR elements must have a @value or children
  expression:
    v: hasValue() or (children().count() > id.count())
  xpath:
    v: @value|f:*|h:div
  source:
    v: http://hl7.org/fhir/StructureDefinition/Element
    link: http://hl7.org/fhir/StructureDefinition/Element
constraint:
  key:
    v: ext-1
  severity:
    v: error
  human:
    v: Must have either extensions or value[x], not both
  expression:
    v: extension.exists() != value.exists()
  xpath:
    v: exists(f:extension)!=exists(f:*[starts-with(local-name(.), "value")])
  source:
    v: http://hl7.org/fhir/StructureDefinition/Extension
    link: http://hl7.org/fhir/StructureDefinition/Extension
is modifier:
  v: true
is modifier reason:
  v: Modifier extensions are expected to modify the meaning or interpretation of the element that contains them
is summary:
  v: true
mapping:
  identity:
    v: rim
  map:
    v: N/A

id:
  v: Specimen.collection.collector
path:
  v: Specimen.collection.collector
short:
  v: Who collected the specimen
definition:
  v: Person who collected the specimen.
min:
  v: 0
max:
  v: 1
base:
  path:
    v: Specimen.collection.collector
  min:
    v: 0
  max:
    v: 1
type:
  code:
    v: Reference
  target profile:
    v: http://hl7.org/fhir/StructureDefinition/Practitioner
    link: http://hl7.org/fhir/StructureDefinition/Practitioner
  target profile:
    v: http://hl7.org/fhir/StructureDefinition/PractitionerRole
    link: http://hl7.org/fhir/StructureDefinition/PractitionerRole
constraint:
  key:
    v: ele-1
  severity:
    v: error
  human:
    v: All FHIR elements must have a @value or children
  expression:
    v: hasValue() or (children().count() > id.count())
  xpath:
    v: @value|f:*|h:div
  source:
    v: http://hl7.org/fhir/StructureDefinition/Element
    link: http://hl7.org/fhir/StructureDefinition/Element
is modifier:
  v: false
is summary:
  v: true
mapping:
  identity:
    v: w5
  map:
    v: FiveWs.actor
mapping:
  identity:
    v: v2
  map:
    v: PRT
mapping:
  identity:
    v: rim
  map:
    v: .participation[typeCode=PFM].role

id:
  v: Specimen.collection.collected[x]
path:
  v: Specimen.collection.collected[x]
slicing:
  discriminator:
    type:
      v: type
    path:
      v: $this
  ordered:
    v: false
  rules:
    v: closed
short:
  v: Collection time
definition:
  v: Time when specimen was collected from subject - the physiologically relevant time.
min:
  v: 1
max:
  v: 1
base:
  path:
    v: Specimen.collection.collected[x]
  min:
    v: 0
  max:
    v: 1
type:
  code:
    v: dateTime
constraint:
  key:
    v: ele-1
  severity:
    v: error
  human:
    v: All FHIR elements must have a @value or children
  expression:
    v: hasValue() or (children().count() > id.count())
  xpath:
    v: @value|f:*|h:div
  source:
    v: http://hl7.org/fhir/StructureDefinition/Element
    link: http://hl7.org/fhir/StructureDefinition/Element
is modifier:
  v: false
is summary:
  v: true
mapping:
  identity:
    v: w5
  map:
    v: FiveWs.init
mapping:
  identity:
    v: v2
  map:
    v: SPM-17
mapping:
  identity:
    v: rim
  map:
    v: .effectiveTime

id:
  v: Specimen.collection.collected[x]:collectedDateTime
path:
  v: Specimen.collection.collected[x]
slice name:
  v: collectedDateTime
short:
  v: Collection date
definition:
  v: The date of sample collection.
min:
  v: 1
max:
  v: 1
base:
  path:
    v: Specimen.collection.collected[x]
  min:
    v: 0
  max:
    v: 1
type:
  code:
    v: dateTime
constraint:
  key:
    v: ele-1
  severity:
    v: error
  human:
    v: All FHIR elements must have a @value or children
  expression:
    v: hasValue() or (children().count() > id.count())
  xpath:
    v: @value|f:*|h:div
  source:
    v: http://hl7.org/fhir/StructureDefinition/Element
    link: http://hl7.org/fhir/StructureDefinition/Element
must support:
  v: true
is modifier:
  v: false
is summary:
  v: true
mapping:
  identity:
    v: fhir-osiris
  map:
    v: OSIRIS_pivot_BiologicalSample.BiologicalSample_CollectDate
mapping:
  identity:
    v: w5
  map:
    v: FiveWs.init
mapping:
  identity:
    v: v2
  map:
    v: SPM-17
mapping:
  identity:
    v: rim
  map:
    v: .effectiveTime

id:
  v: Specimen.collection.duration
path:
  v: Specimen.collection.duration
short:
  v: How long it took to collect specimen
definition:
  v: The span of time over which the collection of a specimen occurred.
min:
  v: 0
max:
  v: 1
base:
  path:
    v: Specimen.collection.duration
  min:
    v: 0
  max:
    v: 1
type:
  code:
    v: Duration
constraint:
  key:
    v: ele-1
  severity:
    v: error
  human:
    v: All FHIR elements must have a @value or children
  expression:
    v: hasValue() or (children().count() > id.count())
  xpath:
    v: @value|f:*|h:div
  source:
    v: http://hl7.org/fhir/StructureDefinition/Element
    link: http://hl7.org/fhir/StructureDefinition/Element
is modifier:
  v: false
is summary:
  v: true
mapping:
  identity:
    v: w5
  map:
    v: FiveWs.init

id:
  v: Specimen.collection.quantity
path:
  v: Specimen.collection.quantity
short:
  v: Percentage of tumor cells
definition:
  v: The percentage of tumor cells quantified in the tumor sample.
min:
  v: 0
max:
  v: 1
base:
  path:
    v: Specimen.collection.quantity
  min:
    v: 0
  max:
    v: 1
type:
  code:
    v: Quantity
  profile:
    v: http://hl7.org/fhir/StructureDefinition/SimpleQuantity
    link: http://hl7.org/fhir/StructureDefinition/SimpleQuantity
constraint:
  key:
    v: ele-1
  severity:
    v: error
  human:
    v: All FHIR elements must have a @value or children
  expression:
    v: hasValue() or (children().count() > id.count())
  xpath:
    v: @value|f:*|h:div
  source:
    v: http://hl7.org/fhir/StructureDefinition/Element
    link: http://hl7.org/fhir/StructureDefinition/Element
must support:
  v: true
is modifier:
  v: false
is summary:
  v: false
mapping:
  identity:
    v: v2
  map:
    v: SPM-12
mapping:
  identity:
    v: rim
  map:
    v: .participation[typeCode=SBJ].role[classCode=SPEC].player.quantity

id:
  v: Specimen.collection.quantity.id
path:
  v: Specimen.collection.quantity.id
representation:
  v: xmlAttr
short:
  v: Unique id for inter-element referencing
definition:
  v: Unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces.
min:
  v: 0
max:
  v: 1
base:
  path:
    v: Element.id
  min:
    v: 0
  max:
    v: 1
type:
  extension:
    url:
      v: http://hl7.org/fhir/StructureDefinition/structuredefinition-fhir-type
    value: url
      v: string
  code:
    v: http://hl7.org/fhirpath/System.String
is modifier:
  v: false
is summary:
  v: false
mapping:
  identity:
    v: rim
  map:
    v: n/a

id:
  v: Specimen.collection.quantity.extension
path:
  v: Specimen.collection.quantity.extension
slicing:
  discriminator:
    type:
      v: value
    path:
      v: url
  description:
    v: Extensions are always sliced by (at least) url
  rules:
    v: open
short:
  v: Additional content defined by implementations
definition:
  v: May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.
comment:
  v: There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.
alias:
  v: extensions
alias:
  v: user content
min:
  v: 0
max:
  v: *
base:
  path:
    v: Element.extension
  min:
    v: 0
  max:
    v: *
type:
  code:
    v: Extension
constraint:
  key:
    v: ele-1
  severity:
    v: error
  human:
    v: All FHIR elements must have a @value or children
  expression:
    v: hasValue() or (children().count() > id.count())
  xpath:
    v: @value|f:*|h:div
  source:
    v: http://hl7.org/fhir/StructureDefinition/Element
    link: http://hl7.org/fhir/StructureDefinition/Element
constraint:
  key:
    v: ext-1
  severity:
    v: error
  human:
    v: Must have either extensions or value[x], not both
  expression:
    v: extension.exists() != value.exists()
  xpath:
    v: exists(f:extension)!=exists(f:*[starts-with(local-name(.), "value")])
  source:
    v: http://hl7.org/fhir/StructureDefinition/Extension
    link: http://hl7.org/fhir/StructureDefinition/Extension
is modifier:
  v: false
is summary:
  v: false
mapping:
  identity:
    v: rim
  map:
    v: n/a

id:
  v: Specimen.collection.quantity.value
path:
  v: Specimen.collection.quantity.value
short:
  v: Numerical value (with implicit precision)
definition:
  v: The value of the measured amount. The value includes an implicit precision in the presentation of the value.
comment:
  v: The implicit precision in the value should always be honored. Monetary values have their own rules for handling precision (refer to standard accounting text books).
requirements:
  v: Precision is handled implicitly in almost all cases of measurement.
min:
  v: 0
max:
  v: 1
base:
  path:
    v: Quantity.value
  min:
    v: 0
  max:
    v: 1
type:
  code:
    v: decimal
constraint:
  key:
    v: ele-1
  severity:
    v: error
  human:
    v: All FHIR elements must have a @value or children
  expression:
    v: hasValue() or (children().count() > id.count())
  xpath:
    v: @value|f:*|h:div
  source:
    v: http://hl7.org/fhir/StructureDefinition/Element
    link: http://hl7.org/fhir/StructureDefinition/Element
is modifier:
  v: false
is summary:
  v: true
mapping:
  identity:
    v: fhir-osiris
  map:
    v: OSIRIS_pivot_BiologicalSample.BiologicalSample_TumorCellularity
mapping:
  identity:
    v: v2
  map:
    v: SN.2 / CQ - N/A
mapping:
  identity:
    v: rim
  map:
    v: PQ.value, CO.value, MO.value, IVL.high or IVL.low depending on the value

id:
  v: Specimen.collection.quantity.comparator
path:
  v: Specimen.collection.quantity.comparator
short:
  v: < | <= | >= | > - how to understand the value
definition:
  v: Not allowed to be used in this context
requirements:
  v: Need a framework for handling measures where the value is <5ug/L or >400mg/L due to the limitations of measuring methodology.
min:
  v: 0
max:
  v: 0
base:
  path:
    v: Quantity.comparator
  min:
    v: 0
  max:
    v: 1
type:
  code:
    v: code
meaning when missing:
  v: If there is no comparator, then there is no modification of the value
constraint:
  key:
    v: ele-1
  severity:
    v: error
  human:
    v: All FHIR elements must have a @value or children
  expression:
    v: hasValue() or (children().count() > id.count())
  xpath:
    v: @value|f:*|h:div
  source:
    v: http://hl7.org/fhir/StructureDefinition/Element
    link: http://hl7.org/fhir/StructureDefinition/Element
is modifier:
  v: true
is modifier reason:
  v: This is labeled as "Is Modifier" because the comparator modifies the interpretation of the value significantly. If there is no comparator, then there is no modification of the value
is summary:
  v: true
binding:
  extension:
    url:
      v: http://hl7.org/fhir/StructureDefinition/elementdefinition-bindingName
    value: string
      v: QuantityComparator
  strength:
    v: required
  description:
    v: How the Quantity should be understood and represented.
  value set:
    v: http://hl7.org/fhir/ValueSet/quantity-comparator|4.0.1
    link: 4.0
    link: .1
mapping:
  identity:
    v: v2
  map:
    v: SN.1 / CQ.1
mapping:
  identity:
    v: rim
  map:
    v: IVL properties

id:
  v: Specimen.collection.quantity.unit
extension:
  url:
    v: http://hl7.org/fhir/StructureDefinition/elementdefinition-translatable
  value: boolean
    v: true
path:
  v: Specimen.collection.quantity.unit
short:
  v: Unit representation
definition:
  v: A human-readable form of the unit.
requirements:
  v: There are many representations for units of measure and in many contexts, particular representations are fixed and required. I.e. mcg for micrograms.
min:
  v: 0
max:
  v: 1
base:
  path:
    v: Quantity.unit
  min:
    v: 0
  max:
    v: 1
type:
  code:
    v: string
pattern: string
  v: %
constraint:
  key:
    v: ele-1
  severity:
    v: error
  human:
    v: All FHIR elements must have a @value or children
  expression:
    v: hasValue() or (children().count() > id.count())
  xpath:
    v: @value|f:*|h:div
  source:
    v: http://hl7.org/fhir/StructureDefinition/Element
    link: http://hl7.org/fhir/StructureDefinition/Element
is modifier:
  v: false
is summary:
  v: true
mapping:
  identity:
    v: v2
  map:
    v: (see OBX.6 etc.) / CQ.2
mapping:
  identity:
    v: rim
  map:
    v: PQ.unit

id:
  v: Specimen.collection.quantity.system
path:
  v: Specimen.collection.quantity.system
short:
  v: System that defines coded unit form
definition:
  v: The identification of the system that provides the coded form of the unit.
requirements:
  v: Need to know the system that defines the coded form of the unit.
min:
  v: 0
max:
  v: 1
base:
  path:
    v: Quantity.system
  min:
    v: 0
  max:
    v: 1
type:
  code:
    v: uri
condition:
  v: qty-3
constraint:
  key:
    v: ele-1
  severity:
    v: error
  human:
    v: All FHIR elements must have a @value or children
  expression:
    v: hasValue() or (children().count() > id.count())
  xpath:
    v: @value|f:*|h:div
  source:
    v: http://hl7.org/fhir/StructureDefinition/Element
    link: http://hl7.org/fhir/StructureDefinition/Element
is modifier:
  v: false
is summary:
  v: true
mapping:
  identity:
    v: v2
  map:
    v: (see OBX.6 etc.) / CQ.2
mapping:
  identity:
    v: rim
  map:
    v: CO.codeSystem, PQ.translation.codeSystem

id:
  v: Specimen.collection.quantity.code
path:
  v: Specimen.collection.quantity.code
short:
  v: Coded form of the unit
definition:
  v: A computer processable form of the unit in some unit representation system.
comment:
  v: The preferred system is UCUM, but SNOMED CT can also be used (for customary units) or ISO 4217 for currency. The context of use may additionally require a code from a particular system.
requirements:
  v: Need a computable form of the unit that is fixed across all forms. UCUM provides this for quantities, but SNOMED CT provides many units of interest.
min:
  v: 0
max:
  v: 1
base:
  path:
    v: Quantity.code
  min:
    v: 0
  max:
    v: 1
type:
  code:
    v: code
pattern: code
  v: C4055283
constraint:
  key:
    v: ele-1
  severity:
    v: error
  human:
    v: All FHIR elements must have a @value or children
  expression:
    v: hasValue() or (children().count() > id.count())
  xpath:
    v: @value|f:*|h:div
  source:
    v: http://hl7.org/fhir/StructureDefinition/Element
    link: http://hl7.org/fhir/StructureDefinition/Element
is modifier:
  v: false
is summary:
  v: true
mapping:
  identity:
    v: v2
  map:
    v: (see OBX.6 etc.) / CQ.2
mapping:
  identity:
    v: rim
  map:
    v: PQ.code, MO.currency, PQ.translation.code

id:
  v: Specimen.collection.method
path:
  v: Specimen.collection.method
short:
  v: Technique used to perform collection
definition:
  v: A coded value specifying the technique that is used to perform the procedure.
min:
  v: 0
max:
  v: 1
base:
  path:
    v: Specimen.collection.method
  min:
    v: 0
  max:
    v: 1
type:
  code:
    v: CodeableConcept
constraint:
  key:
    v: ele-1
  severity:
    v: error
  human:
    v: All FHIR elements must have a @value or children
  expression:
    v: hasValue() or (children().count() > id.count())
  xpath:
    v: @value|f:*|h:div
  source:
    v: http://hl7.org/fhir/StructureDefinition/Element
    link: http://hl7.org/fhir/StructureDefinition/Element
is modifier:
  v: false
is summary:
  v: false
binding:
  extension:
    url:
      v: http://hl7.org/fhir/StructureDefinition/elementdefinition-bindingName
    value: string
      v: SpecimenCollectionMethod
  strength:
    v: example
  description:
    v: The technique that is used to perform the procedure.
  value set:
    v: http://hl7.org/fhir/ValueSet/specimen-collection-method
    link: http://hl7.org/fhir/ValueSet/specimen-collection-method
mapping:
  identity:
    v: v2
  map:
    v: SPM-7
mapping:
  identity:
    v: rim
  map:
    v: .methodCode

id:
  v: Specimen.collection.bodySite
path:
  v: Specimen.collection.bodySite
short:
  v: Topography of the tumor sample
definition:
  v: Anatomical location of the tumor specimen according to the International Classification of Diseases for Oncology.
comment:
  v: If the use case requires BodySite to be handled as a separate resource instead of an inline coded element (e.g. to identify and track separately) then use the standard extension [bodySite](http://hl7.org/fhir/R4/extension-bodysite.html).
min:
  v: 1
max:
  v: 1
base:
  path:
    v: Specimen.collection.bodySite
  min:
    v: 0
  max:
    v: 1
type:
  code:
    v: CodeableConcept
constraint:
  key:
    v: ele-1
  severity:
    v: error
  human:
    v: All FHIR elements must have a @value or children
  expression:
    v: hasValue() or (children().count() > id.count())
  xpath:
    v: @value|f:*|h:div
  source:
    v: http://hl7.org/fhir/StructureDefinition/Element
    link: http://hl7.org/fhir/StructureDefinition/Element
must support:
  v: true
is modifier:
  v: false
is summary:
  v: false
binding:
  strength:
    v: preferred
  value set:
    v: https://ig-osiris.cancer.fr/ig/osiris/ValueSet/Topography
    link: https://ig-osiris.cancer.fr/ig/osiris/ValueSet/Topography
mapping:
  identity:
    v: fhir-osiris
  map:
    v: OSIRIS_pivot_BiologicalSample.BiologicalSample_TopographyCode
mapping:
  identity:
    v: v2
  map:
    v: SPM-8 and SPM-9
mapping:
  identity:
    v: rim
  map:
    v: .targetSiteCode

id:
  v: Specimen.collection.fastingStatus[x]
path:
  v: Specimen.collection.fastingStatus[x]
short:
  v: Whether or how long patient abstained from food and/or drink
definition:
  v: Abstinence or reduction from some or all food, drink, or both, for a period of time prior to sample collection.
comment:
  v: Representing fasting status using this element is preferred to representing it with an observation using a 'pre-coordinated code' such as LOINC 2005-7 (Calcium [Moles/​time] in 2 hour Urine --12 hours fasting), or using a component observation ` such as `Observation.component code` = LOINC 49541-6 (Fasting status - Reported).
requirements:
  v: Many diagnostic tests require fasting to facilitate accurate interpretation.
min:
  v: 0
max:
  v: 1
base:
  path:
    v: Specimen.collection.fastingStatus[x]
  min:
    v: 0
  max:
    v: 1
type:
  code:
    v: CodeableConcept
type:
  code:
    v: Duration
constraint:
  key:
    v: ele-1
  severity:
    v: error
  human:
    v: All FHIR elements must have a @value or children
  expression:
    v: hasValue() or (children().count() > id.count())
  xpath:
    v: @value|f:*|h:div
  source:
    v: http://hl7.org/fhir/StructureDefinition/Element
    link: http://hl7.org/fhir/StructureDefinition/Element
is modifier:
  v: false
is summary:
  v: true
binding:
  extension:
    url:
      v: http://hl7.org/fhir/StructureDefinition/elementdefinition-bindingName
    value: string
      v: FastingStatus
  strength:
    v: extensible
  description:
    v: Codes describing the fasting status of the patient.
  value set:
    v: http://terminology.hl7.org/ValueSet/v2-0916
    link: http://terminology.hl7.org/ValueSet/v2-0916
mapping:
  identity:
    v: v2
  map:
    v: OBR-

id:
  v: Specimen.processing
path:
  v: Specimen.processing
short:
  v: Processing and processing step details
definition:
  v: Details concerning processing and processing steps for the specimen.
min:
  v: 0
max:
  v: *
base:
  path:
    v: Specimen.processing
  min:
    v: 0
  max:
    v: *
type:
  code:
    v: BackboneElement
constraint:
  key:
    v: ele-1
  severity:
    v: error
  human:
    v: All FHIR elements must have a @value or children
  expression:
    v: hasValue() or (children().count() > id.count())
  xpath:
    v: @value|f:*|h:div
  source:
    v: http://hl7.org/fhir/StructureDefinition/Element
    link: http://hl7.org/fhir/StructureDefinition/Element
is modifier:
  v: false
is summary:
  v: false
mapping:
  identity:
    v: rim
  map:
    v: .participation[typeCode=SBJ].act[code=SPCTRT, moodCode=EVN]

id:
  v: Specimen.processing.id
path:
  v: Specimen.processing.id
representation:
  v: xmlAttr
short:
  v: Unique id for inter-element referencing
definition:
  v: Unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces.
min:
  v: 0
max:
  v: 1
base:
  path:
    v: Element.id
  min:
    v: 0
  max:
    v: 1
type:
  extension:
    url:
      v: http://hl7.org/fhir/StructureDefinition/structuredefinition-fhir-type
    value: url
      v: string
  code:
    v: http://hl7.org/fhirpath/System.String
is modifier:
  v: false
is summary:
  v: false
mapping:
  identity:
    v: rim
  map:
    v: n/a

id:
  v: Specimen.processing.extension
path:
  v: Specimen.processing.extension
short:
  v: Additional content defined by implementations
definition:
  v: May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.
comment:
  v: There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.
alias:
  v: extensions
alias:
  v: user content
min:
  v: 0
max:
  v: *
base:
  path:
    v: Element.extension
  min:
    v: 0
  max:
    v: *
type:
  code:
    v: Extension
constraint:
  key:
    v: ele-1
  severity:
    v: error
  human:
    v: All FHIR elements must have a @value or children
  expression:
    v: hasValue() or (children().count() > id.count())
  xpath:
    v: @value|f:*|h:div
  source:
    v: http://hl7.org/fhir/StructureDefinition/Element
    link: http://hl7.org/fhir/StructureDefinition/Element
constraint:
  key:
    v: ext-1
  severity:
    v: error
  human:
    v: Must have either extensions or value[x], not both
  expression:
    v: extension.exists() != value.exists()
  xpath:
    v: exists(f:extension)!=exists(f:*[starts-with(local-name(.), "value")])
  source:
    v: http://hl7.org/fhir/StructureDefinition/Extension
    link: http://hl7.org/fhir/StructureDefinition/Extension
is modifier:
  v: false
is summary:
  v: false
mapping:
  identity:
    v: rim
  map:
    v: n/a

id:
  v: Specimen.processing.modifierExtension
path:
  v: Specimen.processing.modifierExtension
short:
  v: Extensions that cannot be ignored even if unrecognized
definition:
  v: May be used to represent additional information that is not part of the basic definition of the element and that modifies the understanding of the element in which it is contained and/or the understanding of the containing element's descendants. Usually modifier elements provide negation or qualification. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. Applications processing a resource are required to check for modifier extensions. Modifier extensions SHALL NOT change the meaning of any elements on Resource or DomainResource (including cannot change the meaning of modifierExtension itself).
comment:
  v: There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.
requirements:
  v: Modifier extensions allow for extensions that *cannot* be safely ignored to be clearly distinguished from the vast majority of extensions which can be safely ignored. This promotes interoperability by eliminating the need for implementers to prohibit the presence of extensions. For further information, see the [definition of modifier extensions](http://hl7.org/fhir/R4/extensibility.html#modifierExtension).
alias:
  v: extensions
alias:
  v: user content
alias:
  v: modifiers
min:
  v: 0
max:
  v: *
base:
  path:
    v: BackboneElement.modifierExtension
  min:
    v: 0
  max:
    v: *
type:
  code:
    v: Extension
constraint:
  key:
    v: ele-1
  severity:
    v: error
  human:
    v: All FHIR elements must have a @value or children
  expression:
    v: hasValue() or (children().count() > id.count())
  xpath:
    v: @value|f:*|h:div
  source:
    v: http://hl7.org/fhir/StructureDefinition/Element
    link: http://hl7.org/fhir/StructureDefinition/Element
constraint:
  key:
    v: ext-1
  severity:
    v: error
  human:
    v: Must have either extensions or value[x], not both
  expression:
    v: extension.exists() != value.exists()
  xpath:
    v: exists(f:extension)!=exists(f:*[starts-with(local-name(.), "value")])
  source:
    v: http://hl7.org/fhir/StructureDefinition/Extension
    link: http://hl7.org/fhir/StructureDefinition/Extension
is modifier:
  v: true
is modifier reason:
  v: Modifier extensions are expected to modify the meaning or interpretation of the element that contains them
is summary:
  v: true
mapping:
  identity:
    v: rim
  map:
    v: N/A

id:
  v: Specimen.processing.description
path:
  v: Specimen.processing.description
short:
  v: Textual description of procedure
definition:
  v: Textual description of procedure.
min:
  v: 0
max:
  v: 1
base:
  path:
    v: Specimen.processing.description
  min:
    v: 0
  max:
    v: 1
type:
  code:
    v: string
constraint:
  key:
    v: ele-1
  severity:
    v: error
  human:
    v: All FHIR elements must have a @value or children
  expression:
    v: hasValue() or (children().count() > id.count())
  xpath:
    v: @value|f:*|h:div
  source:
    v: http://hl7.org/fhir/StructureDefinition/Element
    link: http://hl7.org/fhir/StructureDefinition/Element
is modifier:
  v: false
is summary:
  v: false
mapping:
  identity:
    v: rim
  map:
    v: .text

id:
  v: Specimen.processing.procedure
path:
  v: Specimen.processing.procedure
short:
  v: Indicates the treatment step applied to the specimen
definition:
  v: A coded value specifying the procedure used to process the specimen.
min:
  v: 0
max:
  v: 1
base:
  path:
    v: Specimen.processing.procedure
  min:
    v: 0
  max:
    v: 1
type:
  code:
    v: CodeableConcept
constraint:
  key:
    v: ele-1
  severity:
    v: error
  human:
    v: All FHIR elements must have a @value or children
  expression:
    v: hasValue() or (children().count() > id.count())
  xpath:
    v: @value|f:*|h:div
  source:
    v: http://hl7.org/fhir/StructureDefinition/Element
    link: http://hl7.org/fhir/StructureDefinition/Element
is modifier:
  v: false
is summary:
  v: false
binding:
  extension:
    url:
      v: http://hl7.org/fhir/StructureDefinition/elementdefinition-bindingName
    value: string
      v: SpecimenProcessingProcedure
  strength:
    v: example
  description:
    v: Type indicating the technique used to process the specimen.
  value set:
    v: http://hl7.org/fhir/ValueSet/specimen-processing-procedure
    link: http://hl7.org/fhir/ValueSet/specimen-processing-procedure
mapping:
  identity:
    v: rim
  map:
    v: .code

id:
  v: Specimen.processing.additive
path:
  v: Specimen.processing.additive
short:
  v: Material used in the processing step
definition:
  v: Material used in the processing step.
min:
  v: 0
max:
  v: *
base:
  path:
    v: Specimen.processing.additive
  min:
    v: 0
  max:
    v: *
type:
  code:
    v: Reference
  target profile:
    v: http://hl7.org/fhir/StructureDefinition/Substance
    link: http://hl7.org/fhir/StructureDefinition/Substance
constraint:
  key:
    v: ele-1
  severity:
    v: error
  human:
    v: All FHIR elements must have a @value or children
  expression:
    v: hasValue() or (children().count() > id.count())
  xpath:
    v: @value|f:*|h:div
  source:
    v: http://hl7.org/fhir/StructureDefinition/Element
    link: http://hl7.org/fhir/StructureDefinition/Element
is modifier:
  v: false
is summary:
  v: false
mapping:
  identity:
    v: v2
  map:
    v: SPM-6
mapping:
  identity:
    v: rim
  map:
    v: .participation[typeCode=CSM].role[classCode=ADTV].code

id:
  v: Specimen.processing.time[x]
path:
  v: Specimen.processing.time[x]
short:
  v: Date and time of specimen processing
definition:
  v: A record of the time or period when the specimen processing occurred. For example the time of sample fixation or the period of time the sample was in formalin.
min:
  v: 0
max:
  v: 1
base:
  path:
    v: Specimen.processing.time[x]
  min:
    v: 0
  max:
    v: 1
type:
  code:
    v: dateTime
type:
  code:
    v: Period
constraint:
  key:
    v: ele-1
  severity:
    v: error
  human:
    v: All FHIR elements must have a @value or children
  expression:
    v: hasValue() or (children().count() > id.count())
  xpath:
    v: @value|f:*|h:div
  source:
    v: http://hl7.org/fhir/StructureDefinition/Element
    link: http://hl7.org/fhir/StructureDefinition/Element
is modifier:
  v: false
is summary:
  v: false
mapping:
  identity:
    v: rim
  map:
    v: .effectiveTime

id:
  v: Specimen.container
path:
  v: Specimen.container
short:
  v: Direct container of specimen (tube/slide, etc.)
definition:
  v: The container holding the specimen. The recursive nature of containers; i.e. blood in tube in tray in rack is not addressed here.
min:
  v: 0
max:
  v: *
base:
  path:
    v: Specimen.container
  min:
    v: 0
  max:
    v: *
type:
  code:
    v: BackboneElement
constraint:
  key:
    v: ele-1
  severity:
    v: error
  human:
    v: All FHIR elements must have a @value or children
  expression:
    v: hasValue() or (children().count() > id.count())
  xpath:
    v: @value|f:*|h:div
  source:
    v: http://hl7.org/fhir/StructureDefinition/Element
    link: http://hl7.org/fhir/StructureDefinition/Element
is modifier:
  v: false
is summary:
  v: false
mapping:
  identity:
    v: rim
  map:
    v: .player.scopingRole[classCode=CONT].scoper

id:
  v: Specimen.container.id
path:
  v: Specimen.container.id
representation:
  v: xmlAttr
short:
  v: Unique id for inter-element referencing
definition:
  v: Unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces.
min:
  v: 0
max:
  v: 1
base:
  path:
    v: Element.id
  min:
    v: 0
  max:
    v: 1
type:
  extension:
    url:
      v: http://hl7.org/fhir/StructureDefinition/structuredefinition-fhir-type
    value: url
      v: string
  code:
    v: http://hl7.org/fhirpath/System.String
is modifier:
  v: false
is summary:
  v: false
mapping:
  identity:
    v: rim
  map:
    v: n/a

id:
  v: Specimen.container.extension
path:
  v: Specimen.container.extension
short:
  v: Additional content defined by implementations
definition:
  v: May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.
comment:
  v: There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.
alias:
  v: extensions
alias:
  v: user content
min:
  v: 0
max:
  v: *
base:
  path:
    v: Element.extension
  min:
    v: 0
  max:
    v: *
type:
  code:
    v: Extension
constraint:
  key:
    v: ele-1
  severity:
    v: error
  human:
    v: All FHIR elements must have a @value or children
  expression:
    v: hasValue() or (children().count() > id.count())
  xpath:
    v: @value|f:*|h:div
  source:
    v: http://hl7.org/fhir/StructureDefinition/Element
    link: http://hl7.org/fhir/StructureDefinition/Element
constraint:
  key:
    v: ext-1
  severity:
    v: error
  human:
    v: Must have either extensions or value[x], not both
  expression:
    v: extension.exists() != value.exists()
  xpath:
    v: exists(f:extension)!=exists(f:*[starts-with(local-name(.), "value")])
  source:
    v: http://hl7.org/fhir/StructureDefinition/Extension
    link: http://hl7.org/fhir/StructureDefinition/Extension
is modifier:
  v: false
is summary:
  v: false
mapping:
  identity:
    v: rim
  map:
    v: n/a

id:
  v: Specimen.container.modifierExtension
path:
  v: Specimen.container.modifierExtension
short:
  v: Extensions that cannot be ignored even if unrecognized
definition:
  v: May be used to represent additional information that is not part of the basic definition of the element and that modifies the understanding of the element in which it is contained and/or the understanding of the containing element's descendants. Usually modifier elements provide negation or qualification. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. Applications processing a resource are required to check for modifier extensions. Modifier extensions SHALL NOT change the meaning of any elements on Resource or DomainResource (including cannot change the meaning of modifierExtension itself).
comment:
  v: There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.
requirements:
  v: Modifier extensions allow for extensions that *cannot* be safely ignored to be clearly distinguished from the vast majority of extensions which can be safely ignored. This promotes interoperability by eliminating the need for implementers to prohibit the presence of extensions. For further information, see the [definition of modifier extensions](http://hl7.org/fhir/R4/extensibility.html#modifierExtension).
alias:
  v: extensions
alias:
  v: user content
alias:
  v: modifiers
min:
  v: 0
max:
  v: *
base:
  path:
    v: BackboneElement.modifierExtension
  min:
    v: 0
  max:
    v: *
type:
  code:
    v: Extension
constraint:
  key:
    v: ele-1
  severity:
    v: error
  human:
    v: All FHIR elements must have a @value or children
  expression:
    v: hasValue() or (children().count() > id.count())
  xpath:
    v: @value|f:*|h:div
  source:
    v: http://hl7.org/fhir/StructureDefinition/Element
    link: http://hl7.org/fhir/StructureDefinition/Element
constraint:
  key:
    v: ext-1
  severity:
    v: error
  human:
    v: Must have either extensions or value[x], not both
  expression:
    v: extension.exists() != value.exists()
  xpath:
    v: exists(f:extension)!=exists(f:*[starts-with(local-name(.), "value")])
  source:
    v: http://hl7.org/fhir/StructureDefinition/Extension
    link: http://hl7.org/fhir/StructureDefinition/Extension
is modifier:
  v: true
is modifier reason:
  v: Modifier extensions are expected to modify the meaning or interpretation of the element that contains them
is summary:
  v: true
mapping:
  identity:
    v: rim
  map:
    v: N/A

id:
  v: Specimen.container.identifier
path:
  v: Specimen.container.identifier
short:
  v: Id for the container
definition:
  v: Id for container. There may be multiple; a manufacturer's bar code, lab assigned identifier, etc. The container ID may differ from the specimen id in some circumstances.
min:
  v: 0
max:
  v: *
base:
  path:
    v: Specimen.container.identifier
  min:
    v: 0
  max:
    v: *
type:
  code:
    v: Identifier
constraint:
  key:
    v: ele-1
  severity:
    v: error
  human:
    v: All FHIR elements must have a @value or children
  expression:
    v: hasValue() or (children().count() > id.count())
  xpath:
    v: @value|f:*|h:div
  source:
    v: http://hl7.org/fhir/StructureDefinition/Element
    link: http://hl7.org/fhir/StructureDefinition/Element
is modifier:
  v: false
is summary:
  v: true
mapping:
  identity:
    v: v2
  map:
    v: SAC-3
mapping:
  identity:
    v: rim
  map:
    v: .id

id:
  v: Specimen.container.description
path:
  v: Specimen.container.description
short:
  v: Textual description of the container
definition:
  v: Textual description of the container.
min:
  v: 0
max:
  v: 1
base:
  path:
    v: Specimen.container.description
  min:
    v: 0
  max:
    v: 1
type:
  code:
    v: string
constraint:
  key:
    v: ele-1
  severity:
    v: error
  human:
    v: All FHIR elements must have a @value or children
  expression:
    v: hasValue() or (children().count() > id.count())
  xpath:
    v: @value|f:*|h:div
  source:
    v: http://hl7.org/fhir/StructureDefinition/Element
    link: http://hl7.org/fhir/StructureDefinition/Element
is modifier:
  v: false
is summary:
  v: false
mapping:
  identity:
    v: rim
  map:
    v: .desc

id:
  v: Specimen.container.type
path:
  v: Specimen.container.type
short:
  v: Kind of container directly associated with specimen
definition:
  v: The type of container associated with the specimen (e.g. slide, aliquot, etc.).
min:
  v: 0
max:
  v: 1
base:
  path:
    v: Specimen.container.type
  min:
    v: 0
  max:
    v: 1
type:
  code:
    v: CodeableConcept
constraint:
  key:
    v: ele-1
  severity:
    v: error
  human:
    v: All FHIR elements must have a @value or children
  expression:
    v: hasValue() or (children().count() > id.count())
  xpath:
    v: @value|f:*|h:div
  source:
    v: http://hl7.org/fhir/StructureDefinition/Element
    link: http://hl7.org/fhir/StructureDefinition/Element
is modifier:
  v: false
is summary:
  v: false
binding:
  extension:
    url:
      v: http://hl7.org/fhir/StructureDefinition/elementdefinition-bindingName
    value: string
      v: SpecimenContainerType
  strength:
    v: example
  description:
    v: Type of specimen container.
  value set:
    v: http://hl7.org/fhir/ValueSet/specimen-container-type
    link: http://hl7.org/fhir/ValueSet/specimen-container-type
mapping:
  identity:
    v: v2
  map:
    v: SPM-27
mapping:
  identity:
    v: rim
  map:
    v: .code

id:
  v: Specimen.container.capacity
path:
  v: Specimen.container.capacity
short:
  v: Container volume or size
definition:
  v: The capacity (volume or other measure) the container may contain.
min:
  v: 0
max:
  v: 1
base:
  path:
    v: Specimen.container.capacity
  min:
    v: 0
  max:
    v: 1
type:
  code:
    v: Quantity
  profile:
    v: http://hl7.org/fhir/StructureDefinition/SimpleQuantity
    link: http://hl7.org/fhir/StructureDefinition/SimpleQuantity
constraint:
  key:
    v: ele-1
  severity:
    v: error
  human:
    v: All FHIR elements must have a @value or children
  expression:
    v: hasValue() or (children().count() > id.count())
  xpath:
    v: @value|f:*|h:div
  source:
    v: http://hl7.org/fhir/StructureDefinition/Element
    link: http://hl7.org/fhir/StructureDefinition/Element
is modifier:
  v: false
is summary:
  v: false
mapping:
  identity:
    v: v2
  map:
    v: one of: SAC 16, SAC17 and SAC 20, or SAC 21 and SAC 20
mapping:
  identity:
    v: rim
  map:
    v: .quantity

id:
  v: Specimen.container.specimenQuantity
path:
  v: Specimen.container.specimenQuantity
short:
  v: Quantity of specimen within container
definition:
  v: The quantity of specimen in the container; may be volume, dimensions, or other appropriate measurements, depending on the specimen type.
min:
  v: 0
max:
  v: 1
base:
  path:
    v: Specimen.container.specimenQuantity
  min:
    v: 0
  max:
    v: 1
type:
  code:
    v: Quantity
  profile:
    v: http://hl7.org/fhir/StructureDefinition/SimpleQuantity
    link: http://hl7.org/fhir/StructureDefinition/SimpleQuantity
constraint:
  key:
    v: ele-1
  severity:
    v: error
  human:
    v: All FHIR elements must have a @value or children
  expression:
    v: hasValue() or (children().count() > id.count())
  xpath:
    v: @value|f:*|h:div
  source:
    v: http://hl7.org/fhir/StructureDefinition/Element
    link: http://hl7.org/fhir/StructureDefinition/Element
is modifier:
  v: false
is summary:
  v: false
mapping:
  identity:
    v: v2
  map:
    v: SAC-23 (value) SAC-24 (units
mapping:
  identity:
    v: rim
  map:
    v: .playedRole[classCode=CONT].quantity

id:
  v: Specimen.container.additive[x]
path:
  v: Specimen.container.additive[x]
short:
  v: Additive associated with container
definition:
  v: Introduced substance to preserve, maintain or enhance the specimen. Examples: Formalin, Citrate, EDTA.
min:
  v: 0
max:
  v: 1
base:
  path:
    v: Specimen.container.additive[x]
  min:
    v: 0
  max:
    v: 1
type:
  code:
    v: CodeableConcept
type:
  code:
    v: Reference
  target profile:
    v: http://hl7.org/fhir/StructureDefinition/Substance
    link: http://hl7.org/fhir/StructureDefinition/Substance
constraint:
  key:
    v: ele-1
  severity:
    v: error
  human:
    v: All FHIR elements must have a @value or children
  expression:
    v: hasValue() or (children().count() > id.count())
  xpath:
    v: @value|f:*|h:div
  source:
    v: http://hl7.org/fhir/StructureDefinition/Element
    link: http://hl7.org/fhir/StructureDefinition/Element
is modifier:
  v: false
is summary:
  v: false
binding:
  extension:
    url:
      v: http://hl7.org/fhir/StructureDefinition/elementdefinition-bindingName
    value: string
      v: SpecimenContainerAdditive
  strength:
    v: example
  description:
    v: Substance added to specimen container.
  value set:
    v: http://terminology.hl7.org/ValueSet/v2-0371
    link: http://terminology.hl7.org/ValueSet/v2-0371
mapping:
  identity:
    v: v2
  map:
    v: SAC-27
mapping:
  identity:
    v: rim
  map:
    v: .scopesRole[classCode=ADTV].player

id:
  v: Specimen.condition
path:
  v: Specimen.condition
short:
  v: Storage method
definition:
  v: The storage temperature of the sample.
comment:
  v: Specimen condition is an observation made about the specimen. It's a point-in-time assessment. It can be used to assess its quality or appropriateness for a specific test.
requirements:
  v: The specimen condition can be used to assess its quality or appropriateness for a specific test.
min:
  v: 0
max:
  v: 1
base:
  path:
    v: Specimen.condition
  min:
    v: 0
  max:
    v: *
type:
  code:
    v: CodeableConcept
constraint:
  key:
    v: ele-1
  severity:
    v: error
  human:
    v: All FHIR elements must have a @value or children
  expression:
    v: hasValue() or (children().count() > id.count())
  xpath:
    v: @value|f:*|h:div
  source:
    v: http://hl7.org/fhir/StructureDefinition/Element
    link: http://hl7.org/fhir/StructureDefinition/Element
must support:
  v: true
is modifier:
  v: false
is summary:
  v: true
binding:
  strength:
    v: extensible
  value set:
    v: https://ig-osiris.cancer.fr/ig/osiris/ValueSet/StorageTemperature
    link: https://ig-osiris.cancer.fr/ig/osiris/ValueSet/StorageTemperature
mapping:
  identity:
    v: fhir-osiris
  map:
    v: OSIRIS_pivot_BiologicalSample.BiologicalSample_StorageTemperature
mapping:
  identity:
    v: v2
  map:
    v: SPM-24

id:
  v: Specimen.condition.id
path:
  v: Specimen.condition.id
representation:
  v: xmlAttr
short:
  v: Unique id for inter-element referencing
definition:
  v: Unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces.
min:
  v: 0
max:
  v: 1
base:
  path:
    v: Element.id
  min:
    v: 0
  max:
    v: 1
type:
  extension:
    url:
      v: http://hl7.org/fhir/StructureDefinition/structuredefinition-fhir-type
    value: url
      v: string
  code:
    v: http://hl7.org/fhirpath/System.String
is modifier:
  v: false
is summary:
  v: false
mapping:
  identity:
    v: rim
  map:
    v: n/a

id:
  v: Specimen.condition.extension
path:
  v: Specimen.condition.extension
slicing:
  discriminator:
    type:
      v: value
    path:
      v: url
  description:
    v: Extensions are always sliced by (at least) url
  rules:
    v: open
short:
  v: Additional content defined by implementations
definition:
  v: May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.
comment:
  v: There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.
alias:
  v: extensions
alias:
  v: user content
min:
  v: 0
max:
  v: *
base:
  path:
    v: Element.extension
  min:
    v: 0
  max:
    v: *
type:
  code:
    v: Extension
constraint:
  key:
    v: ele-1
  severity:
    v: error
  human:
    v: All FHIR elements must have a @value or children
  expression:
    v: hasValue() or (children().count() > id.count())
  xpath:
    v: @value|f:*|h:div
  source:
    v: http://hl7.org/fhir/StructureDefinition/Element
    link: http://hl7.org/fhir/StructureDefinition/Element
constraint:
  key:
    v: ext-1
  severity:
    v: error
  human:
    v: Must have either extensions or value[x], not both
  expression:
    v: extension.exists() != value.exists()
  xpath:
    v: exists(f:extension)!=exists(f:*[starts-with(local-name(.), "value")])
  source:
    v: http://hl7.org/fhir/StructureDefinition/Extension
    link: http://hl7.org/fhir/StructureDefinition/Extension
is modifier:
  v: false
is summary:
  v: false
mapping:
  identity:
    v: rim
  map:
    v: n/a

id:
  v: Specimen.condition.coding
path:
  v: Specimen.condition.coding
short:
  v: Code defined by a terminology system
definition:
  v: A reference to a code defined by a terminology system.
comment:
  v: Codes may be defined very casually in enumerations, or code lists, up to very formal definitions such as SNOMED CT - see the HL7 v3 Core Principles for more information. Ordering of codings is undefined and SHALL NOT be used to infer meaning. Generally, at most only one of the coding values will be labeled as UserSelected = true.
requirements:
  v: Allows for alternative encodings within a code system, and translations to other code systems.
min:
  v: 0
max:
  v: *
base:
  path:
    v: CodeableConcept.coding
  min:
    v: 0
  max:
    v: *
type:
  code:
    v: Coding
constraint:
  key:
    v: ele-1
  severity:
    v: error
  human:
    v: All FHIR elements must have a @value or children
  expression:
    v: hasValue() or (children().count() > id.count())
  xpath:
    v: @value|f:*|h:div
  source:
    v: http://hl7.org/fhir/StructureDefinition/Element
    link: http://hl7.org/fhir/StructureDefinition/Element
is modifier:
  v: false
is summary:
  v: true
mapping:
  identity:
    v: v2
  map:
    v: C*E.1-8, C*E.10-22
mapping:
  identity:
    v: rim
  map:
    v: union(., ./translation)
mapping:
  identity:
    v: orim
  map:
    v: fhir:CodeableConcept.coding rdfs:subPropertyOf dt:CD.coding

id:
  v: Specimen.condition.text
extension:
  url:
    v: http://hl7.org/fhir/StructureDefinition/elementdefinition-translatable
  value: boolean
    v: true
path:
  v: Specimen.condition.text
short:
  v: Plain text representation of the concept
definition:
  v: A human language representation of the concept as seen/selected/uttered by the user who entered the data and/or which represents the intended meaning of the user.
comment:
  v: Very often the text is the same as a displayName of one of the codings.
requirements:
  v: The codes from the terminologies do not always capture the correct meaning with all the nuances of the human using them, or sometimes there is no appropriate code at all. In these cases, the text is used to capture the full meaning of the source.
min:
  v: 0
max:
  v: 1
base:
  path:
    v: CodeableConcept.text
  min:
    v: 0
  max:
    v: 1
type:
  code:
    v: string
pattern: string
  v: Storage temperature of the sample.
constraint:
  key:
    v: ele-1
  severity:
    v: error
  human:
    v: All FHIR elements must have a @value or children
  expression:
    v: hasValue() or (children().count() > id.count())
  xpath:
    v: @value|f:*|h:div
  source:
    v: http://hl7.org/fhir/StructureDefinition/Element
    link: http://hl7.org/fhir/StructureDefinition/Element
is modifier:
  v: false
is summary:
  v: true
mapping:
  identity:
    v: v2
  map:
    v: C*E.9. But note many systems use C*E.2 for this
mapping:
  identity:
    v: rim
  map:
    v: ./originalText[mediaType/code="text/plain"]/data
mapping:
  identity:
    v: orim
  map:
    v: fhir:CodeableConcept.text rdfs:subPropertyOf dt:CD.originalText

id:
  v: Specimen.note
path:
  v: Specimen.note
short:
  v: Comments
definition:
  v: To communicate any details or issues about the specimen or during the specimen collection. (for example: broken vial, sent with patient, frozen).
min:
  v: 0
max:
  v: *
base:
  path:
    v: Specimen.note
  min:
    v: 0
  max:
    v: *
type:
  code:
    v: Annotation
constraint:
  key:
    v: ele-1
  severity:
    v: error
  human:
    v: All FHIR elements must have a @value or children
  expression:
    v: hasValue() or (children().count() > id.count())
  xpath:
    v: @value|f:*|h:div
  source:
    v: http://hl7.org/fhir/StructureDefinition/Element
    link: http://hl7.org/fhir/StructureDefinition/Element
is modifier:
  v: false
is summary:
  v: false
mapping:
  identity:
    v: v2
  map:
    v: OBX
mapping:
  identity:
    v: rim
  map:
    v: .inboundRelationship[typeCode=SUBJ].source[classCode=OBS, moodCode=EVN, code="annotation"].value

element:
  id:
    v: Specimen
  path:
    v: Specimen
  mapping:
    identity:
      v: fhir-osiris
    map:
      v: BiologicalSample
    comment:
      v: Biological sample description
element:
  id:
    v: Specimen.extension
  path:
    v: Specimen.extension
  slicing:
    discriminator:
      type:
        v: value
      path:
        v: url
    ordered:
      v: false
    rules:
      v: open
  min:
    v: 1
element:
  id:
    v: Specimen.extension:BiologicalSampleOrigin
  path:
    v: Specimen.extension
  slice name:
    v: BiologicalSampleOrigin
  short:
    v: The origin of the sample
  definition:
    v: Allows you to indicate the origin of the sample.
  min:
    v: 1
  max:
    v: 1
  type:
    code:
      v: Extension
    profile:
      v: https://ig-osiris.cancer.fr/ig/osiris/StructureDefinition/BiologicalSampleOrigin
      link: https://ig-osiris.cancer.fr/ig/osiris/StructureDefinition/BiologicalSampleOrigin
  must support:
    v: true
element:
  id:
    v: Specimen.extension:BiologicalSampleOrigin.value[x]:valueCodeableConcept
  path:
    v: Specimen.extension.value[x]
  slice name:
    v: valueCodeableConcept
  type:
    code:
      v: CodeableConcept
  mapping:
    identity:
      v: fhir-osiris
    map:
      v: OSIRIS_pivot_BiologicalSample.BiologicalSample_Origin
element:
  id:
    v: Specimen.extension:BasedOnCondition
  path:
    v: Specimen.extension
  slice name:
    v: BasedOnCondition
  short:
    v: Tumur Pathology Event concerned by the sample
  definition:
    v: Tumur Pathology Event concerned by the sample.
  min:
    v: 0
  max:
    v: 1
  type:
    code:
      v: Extension
    profile:
      v: https://ig-osiris.cancer.fr/ig/osiris/StructureDefinition/BasedOnCondition
      link: https://ig-osiris.cancer.fr/ig/osiris/StructureDefinition/BasedOnCondition
  must support:
    v: true
element:
  id:
    v: Specimen.extension:BasedOnCondition.value[x]:valueReference
  path:
    v: Specimen.extension.value[x]
  slice name:
    v: valueReference
  type:
    code:
      v: Reference
    target profile:
      v: https://ig-osiris.cancer.fr/ig/osiris/StructureDefinition/tumor-pathology-event
      link: https://ig-osiris.cancer.fr/ig/osiris/StructureDefinition/tumor-pathology-event
  mapping:
    identity:
      v: fhir-osiris
    map:
      v: OSIRIS_pivot_BiologicalSample.TumorPathologyEvent_Ref
element:
  id:
    v: Specimen.identifier
  path:
    v: Specimen.identifier
  short:
    v: Identifier of the biological sample
  definition:
    v: Unique identifier of the sample within the health center (barcode, text identifier).
  min:
    v: 1
  max:
    v: 1
  must support:
    v: true
  mapping:
    identity:
      v: fhir-osiris
    map:
      v: OSIRIS_pivot_BiologicalSample.BiologicalSample_ExternalAccession
element:
  id:
    v: Specimen.type
  path:
    v: Specimen.type
  short:
    v: The nature of the sample
  definition:
    v: Information indicating the nature of the sample.
  min:
    v: 1
  must support:
    v: true
  binding:
    strength:
      v: preferred
    value set:
      v: https://ig-osiris.cancer.fr/ig/osiris/ValueSet/BiologicalSampleNature
      link: https://ig-osiris.cancer.fr/ig/osiris/ValueSet/BiologicalSampleNature
  mapping:
    identity:
      v: fhir-osiris
    map:
      v: OSIRIS_pivot_BiologicalSample.BiologicalSample_Nature
element:
  id:
    v: Specimen.subject
  path:
    v: Specimen.subject
  type:
    code:
      v: Reference
    target profile:
      v: https://ig-osiris.cancer.fr/ig/osiris/StructureDefinition/onco-patient
      link: https://ig-osiris.cancer.fr/ig/osiris/StructureDefinition/onco-patient
  must support:
    v: true
  mapping:
    identity:
      v: fhir-osiris
    map:
      v: OSIRIS_pivot_BiologicalSample.Patient_Id
element:
  id:
    v: Specimen.parent
  path:
    v: Specimen.parent
  short:
    v: Identifier of the parent biological sample
  definition:
    v: Unique identifier of the parent sample (barcode, text identifier). For example, an aliquot or a sample extracted from another sample (e.g. histological number).
  max:
    v: 1
  type:
    code:
      v: Reference
    target profile:
      v: https://ig-osiris.cancer.fr/ig/osiris/StructureDefinition/onco-biological-sample
      link: https://ig-osiris.cancer.fr/ig/osiris/StructureDefinition/onco-biological-sample
  must support:
    v: true
  mapping:
    identity:
      v: fhir-osiris
    map:
      v: OSIRIS_pivot_BiologicalSample.BiologicalSample_ParentExternalAccession
element:
  id:
    v: Specimen.collection.collected[x]
  path:
    v: Specimen.collection.collected[x]
  slicing:
    discriminator:
      type:
        v: type

v: $this

v: false

v: open

v: 1

id:
  v: Specimen.collection.collected[x]:collectedDateTime
path:
  v: Specimen.collection.collected[x]
slice name:
  v: collectedDateTime
short:
  v: Collection date
definition:
  v: The date of sample collection.
min:
  v: 1
max:
  v: 1
type:
  code:
    v: dateTime
must support:
  v: true
mapping:
  identity:
    v: fhir-osiris
  map:
    v: OSIRIS_pivot_BiologicalSample.BiologicalSample_CollectDate

id:
  v: Specimen.collection.quantity
path:
  v: Specimen.collection.quantity
short:
  v: Percentage of tumor cells
definition:
  v: The percentage of tumor cells quantified in the tumor sample.
must support:
  v: true

id:
  v: Specimen.collection.quantity.value
path:
  v: Specimen.collection.quantity.value
mapping:
  identity:
    v: fhir-osiris
  map:
    v: OSIRIS_pivot_BiologicalSample.BiologicalSample_TumorCellularity

id:
  v: Specimen.collection.quantity.unit
path:
  v: Specimen.collection.quantity.unit
pattern: string
  v: %

id:
  v: Specimen.collection.quantity.code
path:
  v: Specimen.collection.quantity.code
pattern: code
  v: C4055283

id:
  v: Specimen.collection.bodySite
path:
  v: Specimen.collection.bodySite
short:
  v: Topography of the tumor sample
definition:
  v: Anatomical location of the tumor specimen according to the International Classification of Diseases for Oncology.
min:
  v: 1
must support:
  v: true
binding:
  strength:
    v: preferred
  value set:
    v: https://ig-osiris.cancer.fr/ig/osiris/ValueSet/Topography
    link: https://ig-osiris.cancer.fr/ig/osiris/ValueSet/Topography
mapping:
  identity:
    v: fhir-osiris
  map:
    v: OSIRIS_pivot_BiologicalSample.BiologicalSample_TopographyCode

id:
  v: Specimen.condition
path:
  v: Specimen.condition
short:
  v: Storage method
definition:
  v: The storage temperature of the sample.
max:
  v: 1
must support:
  v: true
binding:
  strength:
    v: extensible
  value set:
    v: https://ig-osiris.cancer.fr/ig/osiris/ValueSet/StorageTemperature
    link: https://ig-osiris.cancer.fr/ig/osiris/ValueSet/StorageTemperature
mapping:
  identity:
    v: fhir-osiris
  map:
    v: OSIRIS_pivot_BiologicalSample.BiologicalSample_StorageTemperature

id:
  v: Specimen.condition.text
path:
  v: Specimen.condition.text
pattern: string
  v: Storage temperature of the sample.