FHIR Osiris Implementation Guide
1.1.0 - trial-implementation

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## Resource Profile: Sequencing Device

Official URL: https://ig-osiris.cancer.fr/ig/osiris/StructureDefinition/sequencing-device | Version: 1.1.0
Draft as of 2025-04-03 | Computable Name: SequencingDevice

Description of a sequencing device used for a Sequencing Analysis.

Usage:

- Refer to this Resource Profile: Sequencing Analysis
- Examples for this Resource Profile: Device/fhir-osiris-example-sequencingdevice-1, Device/fhir-osiris-example-sequencingdevice-2 and Device/fhir-osiris-example-sequencingdevice-3

### Formal Views of Profile Content

Description of Profiles, Differentials, Snapshots and how the different presentations work.

- Key Elements Table
- Differential Table
- Snapshot Table
- Statistics/References
- All

Nom | Drapeaux | Card. | Type | Description et contraintes
--- | --- | --- | --- | ---
Device |  | 0..* | Device | Item used in healthcare dom-2: If the resource is contained in another resource, it SHALL NOT contain nested Resources dom-3: If the resource is contained in another resource, it SHALL be referred to from elsewhere in the resource or SHALL refer to the containing resource dom-4: If a resource is contained in another resource, it SHALL NOT have a meta.versionId or a meta.lastUpdated dom-5: If a resource is contained in another resource, it SHALL NOT have a security label dom-6: A resource should have narrative for robust management
implicitRules | ?!Σ | 0..1 | uri | A set of rules under which this content was created ele-1: All FHIR elements must have a @value or children
modifierExtension | ?! | 0..* | Extension | Extensions that cannot be ignored ele-1: All FHIR elements must have a @value or children ext-1: Must have either extensions or value[x], not both
identifier | S | 0..1 | Identifier | GEO accession number ele-1: All FHIR elements must have a @value or children
status | ?!Σ | 0..1 | code | active | inactive | entered-in-error | unknown Binding: FHIRDeviceStatus (required): The availability status of the device. ele-1: All FHIR elements must have a @value or children
type | S | 1..1 | CodeableConcept | Technology name Binding: Platform Name (extensible) ele-1: All FHIR elements must have a @value or children
version | S | 0..1 | BackboneElement | The actual design of the device or software version running on the device ele-1: All FHIR elements must have a @value or children
modifierExtension | ?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized ele-1: All FHIR elements must have a @value or children ext-1: Must have either extensions or value[x], not both
type |  | 0..1 | CodeableConcept | The type of the device version ele-1: All FHIR elements must have a @value or children
coding | Σ | 0..* | Coding | Name of the gene panel Binding: Panel Name (required) ele-1: All FHIR elements must have a @value or children
text | Σ | 0..1 | string | Plain text representation of the concept ele-1: All FHIR elements must have a @value or children Required Pattern: Name of the gene panel
value |  | 1..1 | string | The version text ele-1: All FHIR elements must have a @value or children
Documentation for this format

#### Terminology Bindings

Path | Conformité | ValueSet | URI
Device.status | required | FHIRDeviceStatus `http://hl7.org/fhir/ValueSet/device-status|4.0.1` from the FHIR Standard
Device.type | extensible | PlatformName `https://ig-osiris.cancer.fr/ig/osiris/ValueSet/PlatformName` from this IG
Device.version.type.coding | required | PanelName `https://ig-osiris.cancer.fr/ig/osiris/ValueSet/PanelName` from this IG

This structure is derived from Device

Nom | Drapeaux | Card. | Type | Description et contraintes
--- | --- | --- | --- | ---
Device |  | 0..* | Device | Item used in healthcare
identifier | S | 0..1 | Identifier | GEO accession number
type | S | 1..1 | CodeableConcept | Technology name Binding: Platform Name (extensible)
version | S | 0..1 | BackboneElement | The actual design of the device or software version running on the device
type |  | 0..1 | CodeableConcept | The type of the device version
coding |  | 0..* | Coding | Name of the gene panel Binding: Panel Name (required)
text |  | 0..1 | string | Plain text representation of the concept Required Pattern: Name of the gene panel
Documentation for this format

#### Terminology Bindings (Differential)

Path | Conformité | ValueSet | URI
Device.type | extensible | PlatformName `https://ig-osiris.cancer.fr/ig/osiris/ValueSet/PlatformName` from this IG
Device.version.type.coding | required | PanelName `https://ig-osiris.cancer.fr/ig/osiris/ValueSet/PanelName` from this IG

Nom | Drapeaux | Card. | Type | Description et contraintes
--- | --- | --- | --- | ---
Device |  | 0..* | Device | Item used in healthcare
id | Σ | 0..1 | id | Logical id of this artifact
meta | Σ | 0..1 | Meta | Metadata about the resource
implicitRules | ?!Σ | 0..1 | uri | A set of rules under which this content was created
language |  | 0..1 | code | Language of the resource content Binding: CommonLanguages (preferred): A human language.
Bindings Additionnels | But
AllLanguages | Binding Max
text |  | 0..1 | Narrative | Text summary of the resource, for human interpretation
contained |  | 0..* | Resource | Contained, inline Resources
extension |  | 0..* | Extension | Additional content defined by implementations
modifierExtension | ?! | 0..* | Extension | Extensions that cannot be ignored
identifier | S | 0..1 | Identifier | GEO accession number
definition |  | 0..1 | Reference(DeviceDefinition) | The reference to the definition for the device
udiCarrier | Σ | 0..* | BackboneElement | Unique Device Identifier (UDI) Barcode string
id |  | 0..1 | string | Unique id for inter-element referencing
extension |  | 0..* | Extension | Additional content defined by implementations
modifierExtension | ?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized
deviceIdentifier | Σ | 0..1 | string | Mandatory fixed portion of UDI
issuer |  | 0..1 | uri | UDI Issuing Organization
jurisdiction |  | 0..1 | uri | Regional UDI authority
carrierAIDC | Σ | 0..1 | base64Binary | UDI Machine Readable Barcode String
carrierHRF | Σ | 0..1 | string | UDI Human Readable Barcode String
entryType |  | 0..1 | code | barcode | rfid | manual + Binding: UDIEntryType (required): Codes to identify how UDI data was entered.
status | ?!Σ | 0..1 | code | active | inactive | entered-in-error | unknown Binding: FHIRDeviceStatus (required): The availability status of the device.
statusReason |  | 0..* | CodeableConcept | online | paused | standby | offline | not-ready | transduc-discon | hw-discon | off Binding: FHIRDeviceStatusReason (extensible): The availability status reason of the device.
distinctIdentifier |  | 0..1 | string | The distinct identification string
manufacturer |  | 0..1 | string | Name of device manufacturer
manufactureDate |  | 0..1 | dateTime | Date when the device was made
expirationDate |  | 0..1 | dateTime | Date and time of expiry of this device (if applicable)
lotNumber |  | 0..1 | string | Lot number of manufacture
serialNumber |  | 0..1 | string | Serial number assigned by the manufacturer
deviceName |  | 0..* | BackboneElement | The name of the device as given by the manufacturer
id |  | 0..1 | string | Unique id for inter-element referencing
extension |  | 0..* | Extension | Additional content defined by implementations
modifierExtension | ?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized
name |  | 1..1 | string | The name of the device
type |  | 1..1 | code | udi-label-name | user-friendly-name | patient-reported-name | manufacturer-name | model-name | other Binding: DeviceNameType (required): The type of name the device is referred by.
modelNumber |  | 0..1 | string | The model number for the device
partNumber |  | 0..1 | string | The part number of the device
type | S | 1..1 | CodeableConcept | Technology name Binding: Platform Name (extensible)
specialization |  | 0..* | BackboneElement | The capabilities supported on a device, the standards to which the device conforms for a particular purpose, and used for the communication
id |  | 0..1 | string | Unique id for inter-element referencing
extension |  | 0..* | Extension | Additional content defined by implementations
modifierExtension | ?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized
systemType |  | 1..1 | CodeableConcept | The standard that is used to operate and communicate
version |  | 0..1 | string | The version of the standard that is used to operate and communicate
version | S | 0..1 | BackboneElement | The actual design of the device or software version running on the device
id |  | 0..1 | string | Unique id for inter-element referencing
extension |  | 0..* | Extension | Additional content defined by implementations
modifierExtension | ?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized
type |  | 0..1 | CodeableConcept | The type of the device version
id |  | 0..1 | string | Unique id for inter-element referencing
extension |  | 0..* | Extension | Additional content defined by implementations Slice: Unordered, Open by value:url
coding | Σ | 0..* | Coding | Name of the gene panel Binding: Panel Name (required)
text | Σ | 0..1 | string | Plain text representation of the concept Required Pattern: Name of the gene panel
component |  | 0..1 | Identifier | A single component of the device version
value |  | 1..1 | string | The version text
property |  | 0..* | BackboneElement | The actual configuration settings of a device as it actually operates, e.g., regulation status, time properties
id |  | 0..1 | string | Unique id for inter-element referencing
extension |  | 0..* | Extension | Additional content defined by implementations
modifierExtension | ?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized
type |  | 1..1 | CodeableConcept | Code that specifies the property DeviceDefinitionPropetyCode (Extensible)
valueQuantity |  | 0..* | Quantity | Property value as a quantity
valueCode |  | 0..* | CodeableConcept | Property value as a code, e.g., NTP4 (synced to NTP)
patient |  | 0..1 | Reference(Patient) | Patient to whom Device is affixed
owner |  | 0..1 | Reference(Organization) | Organization responsible for device
contact |  | 0..* | ContactPoint | Details for human/organization for support
location |  | 0..1 | Reference(Location) | Where the device is found
url |  | 0..1 | uri | Network address to contact device
note |  | 0..* | Annotation | Device notes and comments
safety | Σ | 0..* | CodeableConcept | Safety Characteristics of Device
parent |  | 0..1 | Reference(Device) | The parent device
Documentation for this format

#### Terminology Bindings

Path | Conformité | ValueSet | URI
Device.language | preferred | CommonLanguages `http://hl7.org/fhir/ValueSet/languages` from the FHIR Standard
Bindings Additionnels | But
AllLanguages | Binding Max
Device.udiCarrier.entryType | required | UDIEntryType `http://hl7.org/fhir/ValueSet/udi-entry-type|4.0.1` from the FHIR Standard
Device.status | required | FHIRDeviceStatus `http://hl7.org/fhir/ValueSet/device-status|4.0.1` from the FHIR Standard
Device.statusReason | extensible | FHIRDeviceStatusReason `http://hl7.org/fhir/ValueSet/device-status-reason` from the FHIR Standard
Device.deviceName.type | required | DeviceNameType `http://hl7.org/fhir/ValueSet/device-nametype|4.0.1` from the FHIR Standard
Device.type | extensible | PlatformName `https://ig-osiris.cancer.fr/ig/osiris/ValueSet/PlatformName` from this IG
Device.version.type.coding | required | PanelName `https://ig-osiris.cancer.fr/ig/osiris/ValueSet/PanelName` from this IG

This structure is derived from Device

Résumé

Mandatory: 1 element
Must-Support: 3 elements

Key Elements View

Nom | Drapeaux | Card. | Type | Description et contraintes
--- | --- | --- | --- | ---
Device |  | 0..* | Device | Item used in healthcare dom-2: If the resource is contained in another resource, it SHALL NOT contain nested Resources dom-3: If the resource is contained in another resource, it SHALL be referred to from elsewhere in the resource or SHALL refer to the containing resource dom-4: If a resource is contained in another resource, it SHALL NOT have a meta.versionId or a meta.lastUpdated dom-5: If a resource is contained in another resource, it SHALL NOT have a security label dom-6: A resource should have narrative for robust management
implicitRules | ?!Σ | 0..1 | uri | A set of rules under which this content was created ele-1: All FHIR elements must have a @value or children
modifierExtension | ?! | 0..* | Extension | Extensions that cannot be ignored ele-1: All FHIR elements must have a @value or children ext-1: Must have either extensions or value[x], not both
identifier | S | 0..1 | Identifier | GEO accession number ele-1: All FHIR elements must have a @value or children
status | ?!Σ | 0..1 | code | active | inactive | entered-in-error | unknown Binding: FHIRDeviceStatus (required): The availability status of the device. ele-1: All FHIR elements must have a @value or children
type | S | 1..1 | CodeableConcept | Technology name Binding: Platform Name (extensible) ele-1: All FHIR elements must have a @value or children
version | S | 0..1 | BackboneElement | The actual design of the device or software version running on the device ele-1: All FHIR elements must have a @value or children
modifierExtension | ?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized ele-1: All FHIR elements must have a @value or children ext-1: Must have either extensions or value[x], not both
type |  | 0..1 | CodeableConcept | The type of the device version ele-1: All FHIR elements must have a @value or children
coding | Σ | 0..* | Coding | Name of the gene panel Binding: Panel Name (required) ele-1: All FHIR elements must have a @value or children
text | Σ | 0..1 | string | Plain text representation of the concept ele-1: All FHIR elements must have a @value or children Required Pattern: Name of the gene panel
value |  | 1..1 | string | The version text ele-1: All FHIR elements must have a @value or children
Documentation for this format

#### Terminology Bindings

Path | Conformité | ValueSet | URI
Device.status | required | FHIRDeviceStatus `http://hl7.org/fhir/ValueSet/device-status|4.0.1` from the FHIR Standard
Device.type | extensible | PlatformName `https://ig-osiris.cancer.fr/ig/osiris/ValueSet/PlatformName` from this IG
Device.version.type.coding | required | PanelName `https://ig-osiris.cancer.fr/ig/osiris/ValueSet/PanelName` from this IG

Differential View

This structure is derived from Device

Nom | Drapeaux | Card. | Type | Description et contraintes
--- | --- | --- | --- | ---
Device |  | 0..* | Device | Item used in healthcare
identifier | S | 0..1 | Identifier | GEO accession number
type | S | 1..1 | CodeableConcept | Technology name Binding: Platform Name (extensible)
version | S | 0..1 | BackboneElement | The actual design of the device or software version running on the device
type |  | 0..1 | CodeableConcept | The type of the device version
coding |  | 0..* | Coding | Name of the gene panel Binding: Panel Name (required)
text |  | 0..1 | string | Plain text representation of the concept Required Pattern: Name of the gene panel
Documentation for this format

#### Terminology Bindings (Differential)

Path | Conformité | ValueSet | URI
Device.type | extensible | PlatformName `https://ig-osiris.cancer.fr/ig/osiris/ValueSet/PlatformName` from this IG
Device.version.type.coding | required | PanelName `https://ig-osiris.cancer.fr/ig/osiris/ValueSet/PanelName` from this IG

Snapshot View

Nom | Drapeaux | Card. | Type | Description et contraintes
--- | --- | --- | --- | ---
Device |  | 0..* | Device | Item used in healthcare
id | Σ | 0..1 | id | Logical id of this artifact
meta | Σ | 0..1 | Meta | Metadata about the resource
implicitRules | ?!Σ | 0..1 | uri | A set of rules under which this content was created
language |  | 0..1 | code | Language of the resource content Binding: CommonLanguages (preferred): A human language.
Bindings Additionnels | But
AllLanguages | Binding Max
text |  | 0..1 | Narrative | Text summary of the resource, for human interpretation
contained |  | 0..* | Resource | Contained, inline Resources
extension |  | 0..* | Extension | Additional content defined by implementations
modifierExtension | ?! | 0..* | Extension | Extensions that cannot be ignored
identifier | S | 0..1 | Identifier | GEO accession number
definition |  | 0..1 | Reference(DeviceDefinition) | The reference to the definition for the device
udiCarrier | Σ | 0..* | BackboneElement | Unique Device Identifier (UDI) Barcode string
id |  | 0..1 | string | Unique id for inter-element referencing
extension |  | 0..* | Extension | Additional content defined by implementations
modifierExtension | ?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized
deviceIdentifier | Σ | 0..1 | string | Mandatory fixed portion of UDI
issuer |  | 0..1 | uri | UDI Issuing Organization
jurisdiction |  | 0..1 | uri | Regional UDI authority
carrierAIDC | Σ | 0..1 | base64Binary | UDI Machine Readable Barcode String
carrierHRF | Σ | 0..1 | string | UDI Human Readable Barcode String
entryType |  | 0..1 | code | barcode | rfid | manual + Binding: UDIEntryType (required): Codes to identify how UDI data was entered.
status | ?!Σ | 0..1 | code | active | inactive | entered-in-error | unknown Binding: FHIRDeviceStatus (required): The availability status of the device.
statusReason |  | 0..* | CodeableConcept | online | paused | standby | offline | not-ready | transduc-discon | hw-discon | off Binding: FHIRDeviceStatusReason (extensible): The availability status reason of the device.
distinctIdentifier |  | 0..1 | string | The distinct identification string
manufacturer |  | 0..1 | string | Name of device manufacturer
manufactureDate |  | 0..1 | dateTime | Date when the device was made
expirationDate |  | 0..1 | dateTime | Date and time of expiry of this device (if applicable)
lotNumber |  | 0..1 | string | Lot number of manufacture
serialNumber |  | 0..1 | string | Serial number assigned by the manufacturer
deviceName |  | 0..* | BackboneElement | The name of the device as given by the manufacturer
id |  | 0..1 | string | Unique id for inter-element referencing
extension |  | 0..* | Extension | Additional content defined by implementations
modifierExtension | ?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized
name |  | 1..1 | string | The name of the device
type |  | 1..1 | code | udi-label-name | user-friendly-name | patient-reported-name | manufacturer-name | model-name | other Binding: DeviceNameType (required): The type of name the device is referred by.
modelNumber |  | 0..1 | string | The model number for the device
partNumber |  | 0..1 | string | The part number of the device
type | S | 1..1 | CodeableConcept | Technology name Binding: Platform Name (extensible)
specialization |  | 0..* | BackboneElement | The capabilities supported on a device, the standards to which the device conforms for a particular purpose, and used for the communication
id |  | 0..1 | string | Unique id for inter-element referencing
extension |  | 0..* | Extension | Additional content defined by implementations
modifierExtension | ?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized
systemType |  | 1..1 | CodeableConcept | The standard that is used to operate and communicate
version |  | 0..1 | string | The version of the standard that is used to operate and communicate
version | S | 0..1 | BackboneElement | The actual design of the device or software version running on the device
id |  | 0..1 | string | Unique id for inter-element referencing
extension |  | 0..* | Extension | Additional content defined by implementations
modifierExtension | ?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized
type |  | 0..1 | CodeableConcept | The type of the device version
id |  | 0..1 | string | Unique id for inter-element referencing
extension |  | 0..* | Extension | Additional content defined by implementations Slice: Unordered, Open by value:url
coding | Σ | 0..* | Coding | Name of the gene panel Binding: Panel Name (required)
text | Σ | 0..1 | string | Plain text representation of the concept Required Pattern: Name of the gene panel
component |  | 0..1 | Identifier | A single component of the device version
value |  | 1..1 | string | The version text
property |  | 0..* | BackboneElement | The actual configuration settings of a device as it actually operates, e.g., regulation status, time properties
id |  | 0..1 | string | Unique id for inter-element referencing
extension |  | 0..* | Extension | Additional content defined by implementations
modifierExtension | ?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized
type |  | 1..1 | CodeableConcept | Code that specifies the property DeviceDefinitionPropetyCode (Extensible)
valueQuantity |  | 0..* | Quantity | Property value as a quantity
valueCode |  | 0..* | CodeableConcept | Property value as a code, e.g., NTP4 (synced to NTP)
patient |  | 0..1 | Reference(Patient) | Patient to whom Device is affixed
owner |  | 0..1 | Reference(Organization) | Organization responsible for device
contact |  | 0..* | ContactPoint | Details for human/organization for support
location |  | 0..1 | Reference(Location) | Where the device is found
url |  | 0..1 | uri | Network address to contact device
note |  | 0..* | Annotation | Device notes and comments
safety | Σ | 0..* | CodeableConcept | Safety Characteristics of Device
parent |  | 0..1 | Reference(Device) | The parent device
Documentation for this format

#### Terminology Bindings

Path | Conformité | ValueSet | URI
Device.language | preferred | CommonLanguages `http://hl7.org/fhir/ValueSet/languages` from the FHIR Standard
Bindings Additionnels | But
AllLanguages | Binding Max
Device.udiCarrier.entryType | required | UDIEntryType `http://hl7.org/fhir/ValueSet/udi-entry-type|4.0.1` from the FHIR Standard
Device.status | required | FHIRDeviceStatus `http://hl7.org/fhir/ValueSet/device-status|4.0.1` from the FHIR Standard
Device.statusReason | extensible | FHIRDeviceStatusReason `http://hl7.org/fhir/ValueSet/device-status-reason` from the FHIR Standard
Device.deviceName.type | required | DeviceNameType `http://hl7.org/fhir/ValueSet/device-nametype|4.0.1` from the FHIR Standard
Device.type | extensible | PlatformName `https://ig-osiris.cancer.fr/ig/osiris/ValueSet/PlatformName` from this IG
Device.version.type.coding | required | PanelName `https://ig-osiris.cancer.fr/ig/osiris/ValueSet/PanelName` from this IG

This structure is derived from Device

Résumé

Mandatory: 1 element
Must-Support: 3 elements

Other representations of profile: CSV, Excel, Schematron