FHIR Osiris Implementation Guide
1.1.0 - trial-implementation

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## : Biomarker Value Set - XML Representation

Draft as of 2025-04-03

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    <ValueSet xmlns="http://hl7.org/fhir">
      <id value="BiomarkerCode"/>
      <text>
        <status value="generated"/>
        <div xmlns="http://www.w3.org/1999/xhtml"><p class="res-header-id"><b>Generated Narrative: ValueSet BiomarkerCode</b></p><a name="BiomarkerCode"> </a><a name="hcBiomarkerCode"> </a><a name="BiomarkerCode-en-US"> </a><ul><li>Include ces codes sont définis dans <code>https://github.com/siric-osiris/OSIRIS</code><table class="none"><tr><td style="white-space:nowrap"><b>Code</b></td><td><b>Display</b></td></tr><tr><td>C39-1</td><td>CKIT</td></tr><tr><td>C39-2</td><td>b-catenine</td></tr><tr><td>C39-3</td><td>CKIT/DOG1</td></tr><tr><td>C39-4</td><td>FOXL2/DICER</td></tr><tr><td>C39-5</td><td>ETV6-NTRK3</td></tr><tr><td>C39-6</td><td>MYB-NFIB</td></tr><tr><td>C39-7</td><td>PDGFRA/FGFR1</td></tr><tr><td>C39-8</td><td>MDM2</td></tr><tr><td>C39-9</td><td>N-MYC</td></tr><tr><td>C39-10</td><td>C-MYC</td></tr><tr><td>C39-11</td><td>BCR-ABL1</td></tr><tr><td>C39-12</td><td>COL1A1</td></tr><tr><td>C39-13</td><td>DDIT3</td></tr><tr><td>C39-14</td><td>EWSR2</td></tr><tr><td>C39-15</td><td>SYT</td></tr><tr><td>C39-16</td><td>CTNNB1</td></tr><tr><td>C39-17</td><td>FUS</td></tr><tr><td>C39-18</td><td>IGH-BCL2</td></tr><tr><td>C39-19</td><td>JAZF1</td></tr><tr><td>C39-20</td><td>FOXO1A</td></tr><tr><td>C39-21</td><td>TFE3</td></tr><tr><td>C39-22</td><td>HPV</td></tr><tr><td>C39-23</td><td>Merkell</td></tr><tr><td>C39-24</td><td>EBER</td></tr><tr><td>C39-25</td><td>PSA</td></tr><tr><td>C39-26</td><td>CA125</td></tr><tr><td>C39-27</td><td>CA153</td></tr><tr><td>C39-28</td><td>CA199</td></tr><tr><td>C39-29</td><td>Ki67</td></tr><tr><td>C39-30</td><td>Nb mitoses</td></tr><tr><td>C39-31</td><td>RO</td></tr><tr><td>C39-32</td><td>RP</td></tr><tr><td>C39-33</td><td>HER2</td></tr><tr><td>C39-34</td><td>PD-L1</td></tr><tr><td>C39-35</td><td>AMHR2</td></tr><tr><td>C39-36</td><td>P53</td></tr><tr><td>C39-37</td><td>BRCA</td></tr><tr><td>C39-38</td><td>MSI</td></tr><tr><td>C39-39</td><td>CDK12</td></tr><tr><td>C39-40</td><td>BRAF</td></tr><tr><td>C39-41</td><td>NRAS-KRAS</td></tr><tr><td>C39-42</td><td>EGFR</td></tr><tr><td>C39-43</td><td>ALK</td></tr><tr><td>C39-44</td><td>ROS1</td></tr><tr><td>C39-45</td><td>C-MET</td></tr><tr><td>C39-46</td><td>ESR1</td></tr><tr><td>C39-47</td><td>PAM50</td></tr><tr><td>C39-48</td><td>ENDOPREDICT</td></tr></table></li></ul></div>
      </text>
      <url value="https://ig-osiris.cancer.fr/ig/osiris/ValueSet/BiomarkerCode"/>
      <version value="1.1.0"/>
      <name value="BiomarkerCode"/>
      <title value="Biomarker Value Set"/>
      <status value="draft"/>
      <date value="2025-04-03T14:14:07+02:00"/>
      <publisher value="institutcancer"/>
      <contact>
        <name value="institutcancer"/>
        <telecom>
          <system value="url"/>
          <value value="http://cancer.fr"/>
        </telecom>
        <telecom>
          <system value="email"/>
          <value value="osiris@institutcancer.fr"/>
        </telecom>
      </contact>
      <contact>
        <name value="Aurélien JOBARD"/>
        <telecom>
          <system value="email"/>
          <value value="osiris@institutcancer.fr"/>
        </telecom>
      </contact>
      <description value="Biomarker types"/>
      <compose>
        <include>
          <system value="https://github.com/siric-osiris/OSIRIS"/>
          <concept>
            <code value="C39-1"/>
            <display value="CKIT"/>
          </concept>
          <concept>
            <code value="C39-2"/>
            <display value="b-catenine"/>
          </concept>
          <concept>
            <code value="C39-3"/>
            <display value="CKIT/DOG1"/>
          </concept>
          <concept>
            <code value="C39-4"/>
            <display value="FOXL2/DICER"/>
          </concept>
          <concept>
            <code value="C39-5"/>
            <display value="ETV6-NTRK3"/>
          </concept>
          <concept>
            <code value="C39-6"/>
            <display value="MYB-NFIB"/>
          </concept>
          <concept>
            <code value="C39-7"/>
            <display value="PDGFRA/FGFR1"/>
          </concept>
          <concept>
            <code value="C39-8"/>
            <display value="MDM2"/>
          </concept>
          <concept>
            <code value="C39-9"/>
            <display value="N-MYC"/>
          </concept>
          <concept>
            <code value="C39-10"/>
            <display value="C-MYC"/>
          </concept>
          <concept>
            <code value="C39-11"/>
            <display value="BCR-ABL1"/>
          </concept>
          <concept>
            <code value="C39-12"/>
            <display value="COL1A1"/>
          </concept>
          <concept>
            <code value="C39-13"/>
            <display value="DDIT3"/>
          </concept>
          <concept>
            <code value="C39-14"/>
            <display value="EWSR2"/>
          </concept>
          <concept>
            <code value="C39-15"/>
            <display value="SYT"/>
          </concept>
          <concept>
            <code value="C39-16"/>
            <display value="CTNNB1"/>
          </concept>
          <concept>
            <code value="C39-17"/>
            <display value="FUS"/>
          </concept>
          <concept>
            <code value="C39-18"/>
            <display value="IGH-BCL2"/>
          </concept>
          <concept>
            <code value="C39-19"/>
            <display value="JAZF1"/>
          </concept>
          <concept>
            <code value="C39-20"/>
            <display value="FOXO1A"/>
          </concept>
          <concept>
            <code value="C39-21"/>
            <display value="TFE3"/>
          </concept>
          <concept>
            <code value="C39-22"/>
            <display value="HPV"/>
          </concept>
          <concept>
            <code value="C39-23"/>
            <display value="Merkell"/>
          </concept>
          <concept>
            <code value="C39-24"/>
            <display value="EBER"/>
          </concept>
          <concept>
            <code value="C39-25"/>
            <display value="PSA"/>
          </concept>
          <concept>
            <code value="C39-26"/>
            <display value="CA125"/>
          </concept>
          <concept>
            <code value="C39-27"/>
            <display value="CA153"/>
          </concept>
          <concept>
            <code value="C39-28"/>
            <display value="CA199"/>
          </concept>
          <concept>
            <code value="C39-29"/>
            <display value="Ki67"/>
          </concept>
          <concept>
            <code value="C39-30"/>
            <display value="Nb mitoses"/>
          </concept>
          <concept>
            <code value="C39-31"/>
            <display value="RO"/>
          </concept>
          <concept>
            <code value="C39-32"/>
            <display value="RP"/>
          </concept>
          <concept>
            <code value="C39-33"/>
            <display value="HER2"/>
          </concept>
          <concept>
            <code value="C39-34"/>
            <display value="PD-L1"/>
          </concept>
          <concept>
            <code value="C39-35"/>
            <display value="AMHR2"/>
          </concept>
          <concept>
            <code value="C39-36"/>
            <display value="P53"/>
          </concept>
          <concept>
            <code value="C39-37"/>
            <display value="BRCA"/>
          </concept>
          <concept>
            <code value="C39-38"/>
            <display value="MSI"/>
          </concept>
          <concept>
            <code value="C39-39"/>
            <display value="CDK12"/>
          </concept>
          <concept>
            <code value="C39-40"/>
            <display value="BRAF"/>
          </concept>
          <concept>
            <code value="C39-41"/>
            <display value="NRAS-KRAS"/>
          </concept>
          <concept>
            <code value="C39-42"/>
            <display value="EGFR"/>
          </concept>
          <concept>
            <code value="C39-43"/>
            <display value="ALK"/>
          </concept>
          <concept>
            <code value="C39-44"/>
            <display value="ROS1"/>
          </concept>
          <concept>
            <code value="C39-45"/>
            <display value="C-MET"/>
          </concept>
          <concept>
            <code value="C39-46"/>
            <display value="ESR1"/>
          </concept>
          <concept>
            <code value="C39-47"/>
            <display value="PAM50"/>
          </concept>
          <concept>
            <code value="C39-48"/>
            <display value="ENDOPREDICT"/>
          </concept>
        </include>
      </compose>
    </ValueSet>