FHIR Osiris Implementation Guide
1.1.0 - trial-implementation

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## : Analysis Technical Protocol - TTL Representation

Draft as of 2025-04-03

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    @prefix fhir: <http://hl7.org/fhir/> .
    @prefix owl: <http://www.w3.org/2002/07/owl#> .
    @prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
    @prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
    @prefix xsd: <http://www.w3.org/2001/XMLSchema#> .

    # - resource -------------------------------------------------------------------

     a fhir:ValueSet ;
      fhir:nodeRole fhir:treeRoot ;
      fhir:id [ fhir:v "TechnicalProtocol"] ; #
      fhir:text [
    fhir:status [ fhir:v "generated" ] ;
    fhir:div "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p class=\"res-header-id\"><b>Generated Narrative: ValueSet TechnicalProtocol</b></p><a name=\"TechnicalProtocol\"> </a><a name=\"hcTechnicalProtocol\"> </a><a name=\"TechnicalProtocol-en-US\"> </a><ul><li>Include ces codes sont définis dans <code>https://github.com/siric-osiris/OSIRIS</code><table class=\"none\"><tr><td style=\"white-space:nowrap\"><b>Code</b></td><td><b>Display</b></td></tr><tr><td>O6-1</td><td>ChIP-on-Chip</td></tr><tr><td>O6-2</td><td>ChIP-seq</td></tr><tr><td>O6-3</td><td>DNA microarray</td></tr><tr><td>O6-4</td><td>DNA targeted panel sequencing</td></tr><tr><td>O6-5</td><td>Exome sequencing</td></tr><tr><td>O6-6</td><td>Mass spectrometry</td></tr><tr><td>O6-7</td><td>MeDIP-Chip</td></tr><tr><td>O6-8</td><td>MeDIP-seq</td></tr><tr><td>O6-9</td><td>Methylation microarray</td></tr><tr><td>O6-10</td><td>RNA microarray</td></tr><tr><td>O6-11</td><td>RNA targeted panel sequencing</td></tr><tr><td>O6-12</td><td>RNA-seq</td></tr><tr><td>O6-13</td><td>RPPA</td></tr><tr><td>O6-14</td><td>Whole genome bisulfite sequencing</td></tr><tr><td>O6-15</td><td>Whole genome sequencing</td></tr><tr><td>O6-16</td><td>miRNA microarray</td></tr><tr><td>O6-OTH</td><td>Other</td></tr></table></li></ul></div>"^^rdf:XMLLiteral
      ] ; #
      fhir:url [ fhir:v "https://ig-osiris.cancer.fr/ig/osiris/ValueSet/TechnicalProtocol"^^xsd:anyURI] ; #
      fhir:version [ fhir:v "1.1.0"] ; #
      fhir:name [ fhir:v "TechnicalProtocol"] ; #
      fhir:title [ fhir:v "Analysis Technical Protocol"] ; #
      fhir:status [ fhir:v "draft"] ; #
      fhir:date [ fhir:v "2025-04-03T14:14:07+02:00"^^xsd:dateTime] ; #
      fhir:publisher [ fhir:v "institutcancer"] ; #
      fhir:contact ( [
    fhir:name [ fhir:v "institutcancer" ] ;
        ( fhir:telecom [
    fhir:system [ fhir:v "url" ] ;
    fhir:value [ fhir:v "http://cancer.fr" ]     ] [
    fhir:system [ fhir:v "email" ] ;
    fhir:value [ fhir:v "osiris@institutcancer.fr" ]     ] )
      ] [
    fhir:name [ fhir:v "Aurélien JOBARD" ] ;
        ( fhir:telecom [
    fhir:system [ fhir:v "email" ] ;
    fhir:value [ fhir:v "osiris@institutcancer.fr" ]     ] )
      ] ) ; #
      fhir:description [ fhir:v "Analysis technical protocol"] ; #
      fhir:compose [
        ( fhir:include [
    fhir:system [ fhir:v "https://github.com/siric-osiris/OSIRIS"^^xsd:anyURI ] ;
          ( fhir:concept [
    fhir:code [ fhir:v "O6-1" ] ;
    fhir:display [ fhir:v "ChIP-on-Chip" ]       ] [
    fhir:code [ fhir:v "O6-2" ] ;
    fhir:display [ fhir:v "ChIP-seq" ]       ] [
    fhir:code [ fhir:v "O6-3" ] ;
    fhir:display [ fhir:v "DNA microarray" ]       ] [
    fhir:code [ fhir:v "O6-4" ] ;
    fhir:display [ fhir:v "DNA targeted panel sequencing" ]       ] [
    fhir:code [ fhir:v "O6-5" ] ;
    fhir:display [ fhir:v "Exome sequencing" ]       ] [
    fhir:code [ fhir:v "O6-6" ] ;
    fhir:display [ fhir:v "Mass spectrometry" ]       ] [
    fhir:code [ fhir:v "O6-7" ] ;
    fhir:display [ fhir:v "MeDIP-Chip" ]       ] [
    fhir:code [ fhir:v "O6-8" ] ;
    fhir:display [ fhir:v "MeDIP-seq" ]       ] [
    fhir:code [ fhir:v "O6-9" ] ;
    fhir:display [ fhir:v "Methylation microarray" ]       ] [
    fhir:code [ fhir:v "O6-10" ] ;
    fhir:display [ fhir:v "RNA microarray" ]       ] [
    fhir:code [ fhir:v "O6-11" ] ;
    fhir:display [ fhir:v "RNA targeted panel sequencing" ]       ] [
    fhir:code [ fhir:v "O6-12" ] ;
    fhir:display [ fhir:v "RNA-seq" ]       ] [
    fhir:code [ fhir:v "O6-13" ] ;
    fhir:display [ fhir:v "RPPA" ]       ] [
    fhir:code [ fhir:v "O6-14" ] ;
    fhir:display [ fhir:v "Whole genome bisulfite sequencing" ]       ] [
    fhir:code [ fhir:v "O6-15" ] ;
    fhir:display [ fhir:v "Whole genome sequencing" ]       ] [
    fhir:code [ fhir:v "O6-16" ] ;
    fhir:display [ fhir:v "miRNA microarray" ]       ] [
    fhir:code [ fhir:v "O6-OTH" ] ;
    fhir:display [ fhir:v "Other" ]       ] )     ] )
      ] . #