FHIR Osiris Implementation Guide
1.1.0 - trial-implementation

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## : Biomarker Value Set - TTL Representation

Draft as of 2025-04-03

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    @prefix fhir: <http://hl7.org/fhir/> .
    @prefix owl: <http://www.w3.org/2002/07/owl#> .
    @prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
    @prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
    @prefix xsd: <http://www.w3.org/2001/XMLSchema#> .

    # - resource -------------------------------------------------------------------

     a fhir:ValueSet ;
      fhir:nodeRole fhir:treeRoot ;
      fhir:id [ fhir:v "BiomarkerCode"] ; #
      fhir:text [
    fhir:status [ fhir:v "generated" ] ;
    fhir:div "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p class=\"res-header-id\"><b>Generated Narrative: ValueSet BiomarkerCode</b></p><a name=\"BiomarkerCode\"> </a><a name=\"hcBiomarkerCode\"> </a><a name=\"BiomarkerCode-en-US\"> </a><ul><li>Include ces codes sont définis dans <code>https://github.com/siric-osiris/OSIRIS</code><table class=\"none\"><tr><td style=\"white-space:nowrap\"><b>Code</b></td><td><b>Display</b></td></tr><tr><td>C39-1</td><td>CKIT</td></tr><tr><td>C39-2</td><td>b-catenine</td></tr><tr><td>C39-3</td><td>CKIT/DOG1</td></tr><tr><td>C39-4</td><td>FOXL2/DICER</td></tr><tr><td>C39-5</td><td>ETV6-NTRK3</td></tr><tr><td>C39-6</td><td>MYB-NFIB</td></tr><tr><td>C39-7</td><td>PDGFRA/FGFR1</td></tr><tr><td>C39-8</td><td>MDM2</td></tr><tr><td>C39-9</td><td>N-MYC</td></tr><tr><td>C39-10</td><td>C-MYC</td></tr><tr><td>C39-11</td><td>BCR-ABL1</td></tr><tr><td>C39-12</td><td>COL1A1</td></tr><tr><td>C39-13</td><td>DDIT3</td></tr><tr><td>C39-14</td><td>EWSR2</td></tr><tr><td>C39-15</td><td>SYT</td></tr><tr><td>C39-16</td><td>CTNNB1</td></tr><tr><td>C39-17</td><td>FUS</td></tr><tr><td>C39-18</td><td>IGH-BCL2</td></tr><tr><td>C39-19</td><td>JAZF1</td></tr><tr><td>C39-20</td><td>FOXO1A</td></tr><tr><td>C39-21</td><td>TFE3</td></tr><tr><td>C39-22</td><td>HPV</td></tr><tr><td>C39-23</td><td>Merkell</td></tr><tr><td>C39-24</td><td>EBER</td></tr><tr><td>C39-25</td><td>PSA</td></tr><tr><td>C39-26</td><td>CA125</td></tr><tr><td>C39-27</td><td>CA153</td></tr><tr><td>C39-28</td><td>CA199</td></tr><tr><td>C39-29</td><td>Ki67</td></tr><tr><td>C39-30</td><td>Nb mitoses</td></tr><tr><td>C39-31</td><td>RO</td></tr><tr><td>C39-32</td><td>RP</td></tr><tr><td>C39-33</td><td>HER2</td></tr><tr><td>C39-34</td><td>PD-L1</td></tr><tr><td>C39-35</td><td>AMHR2</td></tr><tr><td>C39-36</td><td>P53</td></tr><tr><td>C39-37</td><td>BRCA</td></tr><tr><td>C39-38</td><td>MSI</td></tr><tr><td>C39-39</td><td>CDK12</td></tr><tr><td>C39-40</td><td>BRAF</td></tr><tr><td>C39-41</td><td>NRAS-KRAS</td></tr><tr><td>C39-42</td><td>EGFR</td></tr><tr><td>C39-43</td><td>ALK</td></tr><tr><td>C39-44</td><td>ROS1</td></tr><tr><td>C39-45</td><td>C-MET</td></tr><tr><td>C39-46</td><td>ESR1</td></tr><tr><td>C39-47</td><td>PAM50</td></tr><tr><td>C39-48</td><td>ENDOPREDICT</td></tr></table></li></ul></div>"^^rdf:XMLLiteral
      ] ; #
      fhir:url [ fhir:v "https://ig-osiris.cancer.fr/ig/osiris/ValueSet/BiomarkerCode"^^xsd:anyURI] ; #
      fhir:version [ fhir:v "1.1.0"] ; #
      fhir:name [ fhir:v "BiomarkerCode"] ; #
      fhir:title [ fhir:v "Biomarker Value Set"] ; #
      fhir:status [ fhir:v "draft"] ; #
      fhir:date [ fhir:v "2025-04-03T14:14:07+02:00"^^xsd:dateTime] ; #
      fhir:publisher [ fhir:v "institutcancer"] ; #
      fhir:contact ( [
    fhir:name [ fhir:v "institutcancer" ] ;
        ( fhir:telecom [
    fhir:system [ fhir:v "url" ] ;
    fhir:value [ fhir:v "http://cancer.fr" ]     ] [
    fhir:system [ fhir:v "email" ] ;
    fhir:value [ fhir:v "osiris@institutcancer.fr" ]     ] )
      ] [
    fhir:name [ fhir:v "Aurélien JOBARD" ] ;
        ( fhir:telecom [
    fhir:system [ fhir:v "email" ] ;
    fhir:value [ fhir:v "osiris@institutcancer.fr" ]     ] )
      ] ) ; #
      fhir:description [ fhir:v "Biomarker types"] ; #
      fhir:compose [
        ( fhir:include [
    fhir:system [ fhir:v "https://github.com/siric-osiris/OSIRIS"^^xsd:anyURI ] ;
          ( fhir:concept [
    fhir:code [ fhir:v "C39-1" ] ;
    fhir:display [ fhir:v "CKIT" ]       ] [
    fhir:code [ fhir:v "C39-2" ] ;
    fhir:display [ fhir:v "b-catenine" ]       ] [
    fhir:code [ fhir:v "C39-3" ] ;
    fhir:display [ fhir:v "CKIT/DOG1" ]       ] [
    fhir:code [ fhir:v "C39-4" ] ;
    fhir:display [ fhir:v "FOXL2/DICER" ]       ] [
    fhir:code [ fhir:v "C39-5" ] ;
    fhir:display [ fhir:v "ETV6-NTRK3" ]       ] [
    fhir:code [ fhir:v "C39-6" ] ;
    fhir:display [ fhir:v "MYB-NFIB" ]       ] [
    fhir:code [ fhir:v "C39-7" ] ;
    fhir:display [ fhir:v "PDGFRA/FGFR1" ]       ] [
    fhir:code [ fhir:v "C39-8" ] ;
    fhir:display [ fhir:v "MDM2" ]       ] [
    fhir:code [ fhir:v "C39-9" ] ;
    fhir:display [ fhir:v "N-MYC" ]       ] [
    fhir:code [ fhir:v "C39-10" ] ;
    fhir:display [ fhir:v "C-MYC" ]       ] [
    fhir:code [ fhir:v "C39-11" ] ;
    fhir:display [ fhir:v "BCR-ABL1" ]       ] [
    fhir:code [ fhir:v "C39-12" ] ;
    fhir:display [ fhir:v "COL1A1" ]       ] [
    fhir:code [ fhir:v "C39-13" ] ;
    fhir:display [ fhir:v "DDIT3" ]       ] [
    fhir:code [ fhir:v "C39-14" ] ;
    fhir:display [ fhir:v "EWSR2" ]       ] [
    fhir:code [ fhir:v "C39-15" ] ;
    fhir:display [ fhir:v "SYT" ]       ] [
    fhir:code [ fhir:v "C39-16" ] ;
    fhir:display [ fhir:v "CTNNB1" ]       ] [
    fhir:code [ fhir:v "C39-17" ] ;
    fhir:display [ fhir:v "FUS" ]       ] [
    fhir:code [ fhir:v "C39-18" ] ;
    fhir:display [ fhir:v "IGH-BCL2" ]       ] [
    fhir:code [ fhir:v "C39-19" ] ;
    fhir:display [ fhir:v "JAZF1" ]       ] [
    fhir:code [ fhir:v "C39-20" ] ;
    fhir:display [ fhir:v "FOXO1A" ]       ] [
    fhir:code [ fhir:v "C39-21" ] ;
    fhir:display [ fhir:v "TFE3" ]       ] [
    fhir:code [ fhir:v "C39-22" ] ;
    fhir:display [ fhir:v "HPV" ]       ] [
    fhir:code [ fhir:v "C39-23" ] ;
    fhir:display [ fhir:v "Merkell" ]       ] [
    fhir:code [ fhir:v "C39-24" ] ;
    fhir:display [ fhir:v "EBER" ]       ] [
    fhir:code [ fhir:v "C39-25" ] ;
    fhir:display [ fhir:v "PSA" ]       ] [
    fhir:code [ fhir:v "C39-26" ] ;
    fhir:display [ fhir:v "CA125" ]       ] [
    fhir:code [ fhir:v "C39-27" ] ;
    fhir:display [ fhir:v "CA153" ]       ] [
    fhir:code [ fhir:v "C39-28" ] ;
    fhir:display [ fhir:v "CA199" ]       ] [
    fhir:code [ fhir:v "C39-29" ] ;
    fhir:display [ fhir:v "Ki67" ]       ] [
    fhir:code [ fhir:v "C39-30" ] ;
    fhir:display [ fhir:v "Nb mitoses" ]       ] [
    fhir:code [ fhir:v "C39-31" ] ;
    fhir:display [ fhir:v "RO" ]       ] [
    fhir:code [ fhir:v "C39-32" ] ;
    fhir:display [ fhir:v "RP" ]       ] [
    fhir:code [ fhir:v "C39-33" ] ;
    fhir:display [ fhir:v "HER2" ]       ] [
    fhir:code [ fhir:v "C39-34" ] ;
    fhir:display [ fhir:v "PD-L1" ]       ] [
    fhir:code [ fhir:v "C39-35" ] ;
    fhir:display [ fhir:v "AMHR2" ]       ] [
    fhir:code [ fhir:v "C39-36" ] ;
    fhir:display [ fhir:v "P53" ]       ] [
    fhir:code [ fhir:v "C39-37" ] ;
    fhir:display [ fhir:v "BRCA" ]       ] [
    fhir:code [ fhir:v "C39-38" ] ;
    fhir:display [ fhir:v "MSI" ]       ] [
    fhir:code [ fhir:v "C39-39" ] ;
    fhir:display [ fhir:v "CDK12" ]       ] [
    fhir:code [ fhir:v "C39-40" ] ;
    fhir:display [ fhir:v "BRAF" ]       ] [
    fhir:code [ fhir:v "C39-41" ] ;
    fhir:display [ fhir:v "NRAS-KRAS" ]       ] [
    fhir:code [ fhir:v "C39-42" ] ;
    fhir:display [ fhir:v "EGFR" ]       ] [
    fhir:code [ fhir:v "C39-43" ] ;
    fhir:display [ fhir:v "ALK" ]       ] [
    fhir:code [ fhir:v "C39-44" ] ;
    fhir:display [ fhir:v "ROS1" ]       ] [
    fhir:code [ fhir:v "C39-45" ] ;
    fhir:display [ fhir:v "C-MET" ]       ] [
    fhir:code [ fhir:v "C39-46" ] ;
    fhir:display [ fhir:v "ESR1" ]       ] [
    fhir:code [ fhir:v "C39-47" ] ;
    fhir:display [ fhir:v "PAM50" ]       ] [
    fhir:code [ fhir:v "C39-48" ] ;
    fhir:display [ fhir:v "ENDOPREDICT" ]       ] )     ] )
      ] . #