FHIR Osiris Implementation Guide
1.1.0 - trial-implementation

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## : fhir-osiris-example-sequencinganalysis-1 - XML Representation

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    <Observation xmlns="http://hl7.org/fhir">
      <id value="fhir-osiris-example-sequencinganalysis-1"/>
      <meta>
        <profile
                 value="https://ig-osiris.cancer.fr/ig/osiris/StructureDefinition/sequencing-analysis"/>
      </meta>
      <text>
        <status value="generated"/>
        <div xmlns="http://www.w3.org/1999/xhtml"><p class="res-header-id"><b>Generated Narrative: Observation fhir-osiris-example-sequencinganalysis-1</b></p><a name="fhir-osiris-example-sequencinganalysis-1"> </a><a name="hcfhir-osiris-example-sequencinganalysis-1"> </a><a name="fhir-osiris-example-sequencinganalysis-1-en-US"> </a><div style="display: inline-block; background-color: #d9e0e7; padding: 6px; margin: 4px; border: 1px solid #8da1b4; border-radius: 5px; line-height: 60%"><p style="margin-bottom: 0px"/><p style="margin-bottom: 0px">Profil: <a href="StructureDefinition-sequencing-analysis.html">Sequencing Analysis</a></p></div><p><b>status</b>: Final</p><p><b>code</b>: <span title="Codes:{https://terminology.arkhn.com/osiris C37-3}">Omic</span></p><p><b>subject</b>: <a href="Patient-L304.html">Patient Anonyme Male, Date de Naissance :1967-11-08</a></p><p><b>focus</b>: <a href="Condition-fhir-osiris-example-TumorPathologyEvent-instance-1.html">Condition C0677930</a></p><p><b>effective</b>: 2018-02-07</p><p><b>method</b>: <span title="Codes:{https://github.com/siric-osiris/OSIRIS O6-4}">O6-4</span></p><p><b>specimen</b>: <a href="Specimen-fhir-osiris-example-biologicalsample-1.html">Specimen : extension = Tumoral,-&gt;Condition C0677930; identifier = ech primary; type = C4039816; condition = Tissue Frozen</a></p><p><b>device</b>: <a href="Device-fhir-osiris-example-sequencingdevice-1.html">Device : identifier =  ; type = O7-66</a></p><blockquote><p><b>component</b></p><p><b>code</b>: <span title="Codes:{http://terminology.hl7.org/CodeSystem/umls C0162801}">C0162801</span></p><p><b>value</b>: v351</p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: <span title="Codes:{http://terminology.hl7.org/CodeSystem/umls 258049002}">258049002</span></p><p><b>value</b>: 2017-09-20</p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: <span title="Codes:{http://terminology.hl7.org/CodeSystem/umls C3260254}">C3260254</span></p><p><b>value</b>: 50</p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: <span title="Codes:{http://terminology.hl7.org/CodeSystem/umls C0032246}">C0032246</span></p><p><b>value</b>: <span title="Codes:{https://github.com/siric-osiris/OSIRIS O13-2}">O13-2</span></p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: <span title="Codes:{http://loinc.org LA26327-9}">Intrachromosomal breakpoint</span></p></blockquote></div>
      </text>
      <status value="final"/>
      <code>
        <coding>
          <system value="https://terminology.arkhn.com/osiris"/>
          <code value="C37-3"/>
        </coding>
      </code>
      <subject>🔗
        <reference value="Patient/L304"/>
      </subject>
      <focus>🔗
        <reference
                   value="Condition/fhir-osiris-example-TumorPathologyEvent-instance-1"/>
      </focus>
      <effectiveDateTime value="2018-02-07"/>
      <method>
        <coding>
          <system value="https://github.com/siric-osiris/OSIRIS"/>
          <code value="O6-4"/>
        </coding>
      </method>
      <specimen>🔗
        <reference value="Specimen/fhir-osiris-example-biologicalsample-1"/>
      </specimen>
      <device>🔗
        <reference value="Device/fhir-osiris-example-sequencingdevice-1"/>
      </device>
      <component>
        <code>
          <coding>
            <system value="http://terminology.hl7.org/CodeSystem/umls"/>
            <code value="C0162801"/>
          </coding>
        </code>
        <valueString value="v351"/>
      </component>
      <component>
        <code>
          <coding>
            <system value="http://terminology.hl7.org/CodeSystem/umls"/>
            <code value="258049002"/>
          </coding>
        </code>
        <valueDateTime value="2017-09-20"/>
      </component>
      <component>
        <code>
          <coding>
            <system value="http://terminology.hl7.org/CodeSystem/umls"/>
            <code value="C3260254"/>
          </coding>
        </code>
        <valueQuantity>
          <value value="50"/>
        </valueQuantity>
      </component>
      <component>
        <code>
          <coding>
            <system value="http://terminology.hl7.org/CodeSystem/umls"/>
            <code value="C0032246"/>
          </coding>
        </code>
        <valueCodeableConcept>
          <coding>
            <system value="https://github.com/siric-osiris/OSIRIS"/>
            <code value="O13-2"/>
          </coding>
        </valueCodeableConcept>
      </component>
      <component>
        <code>
          <coding>
            <system value="http://loinc.org"/>
            <code value="LA26327-9"/>
          </coding>
        </code>
      </component>
    </Observation>