This page is part of the OSIRIS FHIR Implementation Guide (v1.1.0: Release) based on FHIR (HL7® FHIR® Standard) R4. This is the current published version in its permanent home (it will always be available at this URL). For a full list of available versions, see the Directory of published versions

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: Pathogenicity Value Set - XML Representation

Draft as of 2025-04-03

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<ValueSet xmlns="http://hl7.org/fhir">
  <id value="Pathogenicity"/>
  <text>
    <status value="generated"/>
    <div xmlns="http://www.w3.org/1999/xhtml"><p class="res-header-id"><b>Generated Narrative: ValueSet Pathogenicity</b></p><a name="Pathogenicity"> </a><a name="hcPathogenicity"> </a><a name="Pathogenicity-en-US"> </a><p>Ce jeu de valeur (ValueSet) inclut les codes selon les règles suivantes :</p><ul><li>Include ces codes sont définis dans <code>https://github.com/siric-osiris/OSIRIS</code><table class="none"><tr><td style="white-space:nowrap"><b>Code</b></td><td><b>Display</b></td></tr><tr><td>O81-1</td><td>Pathogenic</td></tr><tr><td>O81-2</td><td>Likely pathogenic</td></tr><tr><td>O81-3</td><td>Uncertain significance</td></tr><tr><td>O81-4</td><td>Likely benign</td></tr><tr><td>O81-5</td><td>Benign</td></tr></table></li><li>Include ces codes sont définis dans <a href="http://terminology.hl7.org/6.2.0/CodeSystem-umls.html"><code>http://terminology.hl7.org/CodeSystem/umls</code></a><table class="none"><tr><td style="white-space:nowrap"><b>Code</b></td><td><b>Display</b></td></tr><tr><td>C0439673</td><td>Unknown</td></tr></table></li></ul></div>
  </text>
  <url value="https://ig-osiris.cancer.fr/ig/osiris/ValueSet/Pathogenicity"/>
  <version value="1.1.0"/>
  <name value="Pathogenicity"/>
  <title value="Pathogenicity Value Set"/>
  <status value="draft"/>
  <date value="2025-04-03T14:14:07+02:00"/>
  <publisher value="institutcancer"/>
  <contact>
    <name value="institutcancer"/>
    <telecom>
      <system value="url"/>
      <value value="http://cancer.fr"/>
    </telecom>
    <telecom>
      <system value="email"/>
      <value value="osiris@institutcancer.fr"/>
    </telecom>
  </contact>
  <contact>
    <name value="Aurélien JOBARD"/>
    <telecom>
      <system value="email"/>
      <value value="osiris@institutcancer.fr"/>
    </telecom>
  </contact>
  <description value="Pathogenicity"/>
  <compose>
    <include>
      <system value="https://github.com/siric-osiris/OSIRIS"/>
      <concept>
        <code value="O81-1"/>
        <display value="Pathogenic"/>
      </concept>
      <concept>
        <code value="O81-2"/>
        <display value="Likely pathogenic"/>
      </concept>
      <concept>
        <code value="O81-3"/>
        <display value="Uncertain significance"/>
      </concept>
      <concept>
        <code value="O81-4"/>
        <display value="Likely benign"/>
      </concept>
      <concept>
        <code value="O81-5"/>
        <display value="Benign"/>
      </concept>
    </include>
    <include>
      <system value="http://terminology.hl7.org/CodeSystem/umls"/>
      <concept>
        <code value="C0439673"/>
        <display value="Unknown"/>
      </concept>
    </include>
  </compose>
</ValueSet>